Xanthomonas campestris pv. raphani: XCR_0525
Help
Entry
XCR_0525 CDS
T01872
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCR_0525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_0525
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCR_0525
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCR_0525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEL05445
LinkDB
All DBs
Position
553733..555454
Genome browser
AA seq
573 aa
AA seq
DB search
MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFRE
AREQRAADEARRGGGRSGPGGASRSGSGGGRRDGAGADGKPRPPRRKPRVEGEADPAAAP
SETPVVAAAAAETPAVTAAEGERAPRKRRRRRNGRPVEGAEPVVASTPVPAPAAPRKPTQ
VVAKPVRAAAKPSGSPSLLSRIGRRLRSLVSGS
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgactttttcctcgttcgacctgcatccggcgctg
gtcgccgggctggagagcgccgggtttacgcgctgcacgccgatccaggcgctgaccctg
ccggtcgccctgccgggcggcgacgtcgccggccaggcccagaccggcaccggcaaaacg
ctggcgttcctggtcgcggtgatgaaccgcctgctgatccgccccgcgctggccgaccgc
aagccggaggacccgcgcgccctgatcctggcgcccacccgcgagctggccatccagatc
cacaaggacgcggtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggt
ggcgtggactacgacaagcagcgcgagctgctgcagcagggcgtggacgtgatcatcgcc
accccgggccggctgatcgactacgtcaagcagcacaaggtggtctcgctgcatgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgaacgcggcacccgccagacgctgttgttctcggcc
acgctcagccaccgcgtgctggagctggcctatgagcacatgaacgagccggaaaagctc
gtcgtggagaccgagaccatcaccgccgcgcgggtgcgtcagcgcatctatttcccctcc
gacgaagagaagcagacgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtggagcgggtggcgcgcaccctggagcggcac
ggctaccgcgtgggcgtgttgtccggcgacgtaccgcagaaaaagcgcgagtcgttgctc
aatcgcttccagaagggccagctggaaatcctggtggccaccgacgtggccgcgcgcggc
ctgcacatcgatggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagac
tacgtgcatcgcatcgggcgcaccgcgcgcctgggcgaggagggcgatgcgatcagcttc
gcctgcgagcgttatgcgatgagcctgccggacatcgaggcctacatcgagcagaagatc
ccggtcgagccggtgactaccgagctgctgaccccgttgccgcgcacaccgcgcgcaaca
gtggaaggtgaagaggtcgacgacgacgctggcgacagcgtgggcacgatcttccgcgaa
gcacgcgagcagcgtgcggccgacgaagcgcgtcgtggcggtggccgtagcggtcccggt
ggcgcatcgcgtagcggcagtggcggcggtcgtcgcgacggcgccggtgccgatggcaag
ccgcgcccgccgcgtcgcaagccgcgcgtggaaggcgaggccgatccggccgcagcgccc
agcgagacgccggtggttgccgctgctgccgcagaaactcctgccgtcacggcggccgaa
ggcgagcgcgcaccgcgcaagcgccgtcggcgtcgcaacggccgcccggtcgaaggtgcc
gagccggtggtggcatccacgcccgtgccggcccccgccgcgccgcgcaaacccacccag
gtcgtggccaagccggtacgtgccgcagccaagccgtcgggcagcccgtcgttgctgagc
cgcatcggacgcaggctgcgttcgttggtctccggcagctga
DBGET
integrated database retrieval system
