Xanthomonas campestris pv. raphani: XCR_0742
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Entry
XCR_0742 CDS
T01872
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCR_0742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_0742
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCR_0742
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCR_0742
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AEL05659
LinkDB
All DBs
Position
complement(766150..767538)
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AA seq
462 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSSGPRQATAGAGAGRRDAGRGGSGRPASRGA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccttgggcctggcgcccttcctgctgcgcgcattggccgagcagggc
tatgaaacccccaccgccatccagcagcaggcgatcccgctcgtgctggccggccatgac
ctgctggctggcgcacagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccaccccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcattccgagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccggctgatcgaccatatc
gagcgccgcagcgtggacctgtccggcatcgaagtgctgatcctggatgaagccgaccgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcggcag
gaccgccagaccctgctgttttcggccacgttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcacgcaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggccagcgcatgcgtgcactgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgacatcgccgcgcgcggtatcgatatcgaccagttgccgaaggtcatcaac
tatgacctgccgatggtggccgaggactacgtgcaccgcatcggccgcactggccgtaac
ggttcgaccggcgaggcgatctcgttggtggcacaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgccccgggccgtgccgagcagccgggtggcgatcgc
gccccgcgcaagagccacgcccgtcgcccgcatggcgatgcaccgcgccaggcacatgcg
catgccggcccgaagaagccgggtggccagcgcagcagcgggccgcgtcaggccactgcc
ggcgccggtgccggccgtcgcgacgctggtcgtggtggcagtggccggccggccagccgc
ggcgcctaa
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