Xanthomonas campestris pv. raphani: XCR_0795
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Entry
XCR_0795 CDS
T01872
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp00040
Pentose and glucuronate interconversions
xcp01100
Metabolic pathways
xcp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XCR_0795
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCR_0795
Enzymes [BR:
xcp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XCR_0795
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectate_lyase_5
Motif
Other DBs
NCBI-ProteinID:
AEL05712
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All DBs
Position
820653..821759
Genome browser
AA seq
368 aa
AA seq
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MGVVLGAALLSGTAYAADPALEVATTGWATQNGGTKGGSKAAAADIYTVTNAAQLKAALK
AKAGSNGRIIKIKGVIDISEGKAYTKTSDMKSRGRLDVPTKTSLIGVGTNAEIREGFFYV
KANDVIVRNLTIENPWDPEPVWDADDGDAGNWNSEYDGLTVEGASNVWVDHVTFTDGRRT
DDQNGTANGRPKQHHDGAMDVKKGANYVTISYSVFKLHEKNSLIGSSDSASSTDSGKLKV
TIHNTLFQDIAARAPRVRFGQVHLYNNYHVGSTSNKVYPFSHAHGVGKESKIFSENNAFD
ISGVSSCAKIAGDYKGSVYRDQGSLINGKALTCSWNSNIGWKPPYTYNILPANKVAADVK
AKAGAGKL
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgtcgttctgggcgctgcgttgttgtcgggcaccgcgtatgcggcagaccctgca
ctggaagtggccaccaccggctgggccacccagaacggcggcaccaagggcggctccaag
gcggcggcggcagacatttacaccgtcaccaacgcggcccagctcaaggcggccttgaag
gccaaggccggcagcaacggccgcatcatcaagatcaagggtgtcatcgacatcagcgaa
ggcaaggcctacaccaagacctcggacatgaagagccgtggtcgcctggatgtgccgacc
aagaccagcttgattggcgtcggcaccaatgccgaaatccgcgaaggctttttctacgtc
aaggccaacgacgtcatcgtgcgcaatctcaccatcgagaatccgtgggatccggagccg
gtgtgggatgccgacgacggcgatgcaggcaactggaactccgaatacgacgggttgacc
gtggaaggcgccagcaacgtgtgggtggaccatgtgaccttcaccgacggccgccgcacc
gatgaccagaacggcaccgccaacggccgccccaagcagcatcacgatggtgcgatggac
gtcaagaagggcgccaactacgtgaccatttcgtattcggtgttcaagctgcacgagaag
aacagcctgatcggctccagcgacagtgcatcgagcaccgactccggcaagctcaaggtc
accatccacaacaccttgttccaggacattgccgcacgtgcgccgcgtgtacgcttcggc
caggtgcatctgtacaacaactaccacgtcggcagcaccagcaataaggtgtacccgttc
tcgcatgcgcatggcgtgggcaaggaatcgaagatcttctccgagaacaatgccttcgac
atcagcggcgtgagcagctgcgccaagattgctggcgactacaagggcagcgtgtaccgt
gaccagggctcgttgatcaacggcaaggcactgacctgcagctggaacagcaacatcggc
tggaagcctccgtatacctacaacatcctgccggccaacaaggtggcagcggacgtcaag
gccaaggctggcgccggcaagctgtaa
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