Xanthomonas campestris pv. raphani: XCR_0796
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Entry
XCR_0796 CDS
T01872
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp00040
Pentose and glucuronate interconversions
xcp01100
Metabolic pathways
xcp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XCR_0796
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCR_0796
Enzymes [BR:
xcp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XCR_0796
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GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AEL05713
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Position
822171..823283
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AA seq
370 aa
AA seq
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MLRAMCCACLGLASMTASADPARAVATTGWATQNGGTRGGSAAATSDTFVVSDAASLKAA
LKATVGAGGRLIYLQGVIDISEGVAYTTKAEMKVRARLEVPAKTTLIGVGADAWIIEGYL
LVKGNDVIVRNINIENPWGPEPLWDPTDGKLGNWNSEFDGLTVDGASNVWIDHMVFTDGR
RLDDRSEIGNGRHIQHHDGALDVKNGANYVTISHTFFDHHEKNTLIGSTDKTDRGDVGKL
KVTIHDSLFNAVASRGPRGRYGQIHLFNNLHLGDQADADYPFNYAHGVAIKSALLSENNV
FQIGGASGCKDVVQDIGGGTYVDRGSQVNGVPMVCTLNTAIGWKPPYAYSLLPTAAVAAA
VLADVGTGVL
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgcgatgtgctgcgcatgcctgggtctggcgagcatgactgcgtctgccgat
ccggcacgcgcggtcgcaacgaccggttgggcaacgcagaacggcggcacgcgcggcggc
agtgccgcggcaacgtcagatacgttcgtggtgagtgatgcggcctcgctcaaggctgca
ttgaaggcgacggtgggtgcgggtgggcggctgatctatctgcaaggtgtcatcgatatc
agcgaaggcgtggcgtacaccaccaaggccgagatgaaagtgcgtgcgcggctcgaagtg
cccgccaagaccaccctgatcggtgttggcgccgatgcctggatcattgaaggctatctg
ctagtgaagggcaacgacgtgatcgtgcgcaatatcaacatcgaaaatccctggggcccg
gagccactgtgggacccgaccgacggcaagctgggcaactggaactccgagttcgatggc
ctgaccgtggatggcgccagcaatgtctggatcgaccatatggtcttcactgatggacgg
cgtctggacgaccgcagcgagatcggcaatgggcggcatatccagcatcacgacggtgcg
ctggacgtcaagaacggtgccaactacgtgaccatctcgcacacgttcttcgatcaccac
gagaaaaatacgctgatcggctccaccgacaagaccgaccgcggcgatgtcggcaagctg
aaggtcaccatccacgactcgctgttcaacgcggttgcctcgcgcggcccgcgtggccgc
tacggccagatccacctgttcaacaatctgcacctgggtgaccaggccgatgcggattat
ccgttcaattacgcgcacggcgtggcgatcaaatcggcgctgttgtcggagaacaacgtg
ttccagatcggtggcgccagcggctgcaaggacgtggtacaggacatcggcggcggcacc
tatgttgatcgcggatcgcaggtcaacggcgtgccgatggtgtgcacgctcaataccgcc
atcggctggaagccgccgtatgcgtatagcctgttgccgactgcggcagtcgccgcggca
gtgctggcggatgtgggaaccggggtgctgtag
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