Xanthomonas campestris pv. raphani: XCR_1081
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Entry
XCR_1081 CDS
T01872
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XCR_1081 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcp03021
]
XCR_1081 (rpoC)
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1081 (rpoC)
Enzymes [BR:
xcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XCR_1081 (rpoC)
Transcription machinery [BR:
xcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XCR_1081 (rpoC)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XCR_1081 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEL05993
LinkDB
All DBs
Position
1111958..1116175
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDTVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQAVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIV
RIVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEITDQGNSKFLNGEQVERQRVIEENARLVTRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVAEPVATVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgt
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggtaaccgtccggagtggatggtcatgacc
gtgttgcccgtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaatcgtctgcgc
cgcctgctggagctcaacgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggatgcgctgctggacaacggccggcgcggtcgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccattc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaggtgatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgtttgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtcgacaccgtc
gatggcaagcgcaccagcggcacctcgatcgtggataccacggtcggccgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgactgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctacgcaacccgcgcaggcgtgtcgatc
ggcatcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggcagaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcgtaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgagaaggttgaaaatgccaagggcgaaaccatcgaccagaagtcgatg
aactcgctctacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgttgaagacggcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaagtcgattgcggcaccaccgagggg
ttgatcatgaccccgatcgtggaaggcggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgtcgtggccgaggacgtgtacctgccgggcaacgacgaagaaccgatcgtc
acccgcaacacgttgctcgacgaagcctgggttgccaagctggaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgc
tacggtcgcgatctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtactcagctgaccatgcgtacattccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagcggcgcattggttgcggtctcgcgt
tcgggcgaactgtccgtgctcgacggccatggccgtgagcgtgagcgttacaagctgccc
tacggtgccaccatcaccgccaaggatggtgacgcagtcaaggccggtcaggccgtggcc
aactgggatccgcataaccacccgatcgtgtcggaagtggccggtttcattcgcttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcgtcg
cgcgaaatcaccgacccgaagcgtcgtggtgcccaggccaaggagttgcgcccgatcgtg
cgcatcgtcgatgccaagggcaatgatctgacgattccgaatacggatctgccggcgcag
tacctgctgccgccgcgctcgatcgtcaacctgcaggacggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctg
ccgcgcgtggccgatctgttcgaagcacgcaagccgaaggatcctgcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgtctgatcatcaag
gacaccgatggcagcgaacacgaagagctgattcccaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgagccgctggccgcgtatctggtcaaggaaatccaggac
gtgtaccgcctgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgtaaggtcgagatcaccgatcagggcaacagcaagttcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcacgcctggtcacgcgcaacgaactgccg
gccaagtacgacccggtgctgctgggtatcaccaaggcctcgctggccaccgagtcgttc
atctcggcggcgtcgttccaggagaccacacgcgtgttgaccgaggctgccgtccgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtcatcgtgggtcgtctgattccggcc
ggtaccggtctggcgtatcacgccggtcgccgcaaggcatcgggtctgaccgactcggaa
atggaaacgctgtccggcaagccggcagtggctgaaccggtcgcgaccgtggccgacgct
ggtgcggacgaggagtaa
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integrated database retrieval system
