Xanthomonas campestris pv. raphani: XCR_1112
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Entry
XCR_1112 CDS
T01872
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XCR_1112 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcp03021
]
XCR_1112 (rpoA)
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1112 (rpoA)
Enzymes [BR:
xcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XCR_1112 (rpoA)
Transcription machinery [BR:
xcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XCR_1112 (rpoA)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XCR_1112 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AEL06024
LinkDB
All DBs
Position
1133869..1134867
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATLSLSKQGPGTVTAADIRTDHN
VEIINGDHVICHLTKDTALNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVR
RVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLALGMKLENWPPAGVAQHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgcccccgcggtccgcagatcgaacgtcttacc
gacaaccgcgcaaaggtcgtaatcgagccgttggagcgcggttacgggcacacgctgggc
aatgccctgcgtcgtgtgctgttgtcgtcgatccccggttttgcgatcaccgaggtcgag
atcgacggcgtgctgcatgagtacaccacggtcgaagggctgcaggaagacgtgcttgac
gtcctgctcaacctgaaggatgtggcaatccggatgcacagcggcgatagcgccacgctg
tcgttgtccaagcagggtccgggtacggtcactgcggccgacatcaggaccgatcacaac
gttgagatcatcaacggcgaccacgtgatctgccacctgaccaaggacacggcgctgaac
atgcgcctgaagatcgagcgtggttttggctatcagccggctgccgcgcgtcgtcgtccg
gacgaagagacccgcaccatcggtcgtctgatgctggatgcgtcgttctcgcccgtgcgt
cgcgttgcctatgccgtggaagctgcacgcgtcgaacagcgtaccgacctcgacaagctg
gtcatcgatatcgaaaccaacggcacgatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgatcagctgtcggtgttcggcgatttcacccaccgcgatcgcggtgcg
gccaagccggctgccagcggcgtggatccggtgctgctgcgcccgatcgacgacctcgag
ctgaccgtgcgttcggccaactgcctgaaggctgagagcatctactacatcggcgatctg
atccagaagaccgaagtcgagctgctcaagaccccgaatctgggcaagaagtcgctgacc
gaaatcaaggaagtgctggcacagcgcggccttgcactgggtatgaagctggagaactgg
ccgccggccggtgtcgctcagcacggcatgcttggttaa
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