Xanthomonas campestris pv. raphani: XCR_1532
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Entry
XCR_1532 CDS
T01872
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xcp
Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xcp03009
]
XCR_1532 (rumA)
Enzymes [BR:
xcp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
XCR_1532 (rumA)
Ribosome biogenesis [BR:
xcp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
XCR_1532 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
PCMT
RrnaAD
Methyltr_RsmB-F
Methyltransf_11
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_12
Methyltransf_23
TRAM
UPF0020
Methyltransf_32
PrmA
Motif
Other DBs
NCBI-ProteinID:
AEL06431
LinkDB
All DBs
Position
1565230..1566564
Genome browser
AA seq
444 aa
AA seq
DB search
MARSRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALLGEVVTAEPTARSRHF
DEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQ
TVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP
QLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLTARDEQALVEFAQAHDFAIFLQP
GGVDSVHPLWPQEVPLSFRLPQWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDR
VLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQ
TAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSL
LSAGAMDMFPHTAHVESIAVFEKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggccagatccagaaaccgtttcgaccgtaccccgttccagaccgcgatcaccgacctg
agccatgacggccgcggtgtggcgcgccgcgatggcgagggcggcaaggtcaccttcatc
agtggcgcgctgctgggtgaggtcgtgaccgccgagcccaccgcacgcagccgccatttc
gatgaggccaagacggtggaagtgttgcaggcatcgccgcagcgggtggcgccgcgctgc
ccgcattttggtgtgtgcgccggttgcgtgctgcagcatctggaagaatcgcagcagatc
gtggccaagcagcgcgtgctgatggacaacctggagcgcatcggccacgtcacgccgcag
acggtgctgccggcgctggtgggcgatacctggggctatcgccgcaagggccgcttttcg
gtgcgccgggtcgagaagaaggacaagaccctggtcggcttccgcgaactggacccgcgc
ttcgtggccgacctgtcggtctgctacacggtgataccgcagattggcgagaagattccg
cagctggcggcgctggtcgaaggcatggacggcaagcgcgacattccgcagattgaattc
atcgccggcgacgatgccgtggcgctgaccatccgccacctgcagccgctcaccgcgcgt
gacgagcaggccttggtggagttcgcccaggcgcacgattttgcgatcttcctgcagcct
ggcggcgtagacagcgtgcatccgttgtggccgcaagaggtgcccttgtcgttccggttg
ccgcaatgggatgtggagctggcgtttcgtccgttggacttcatccaggtcaatgcctcg
ctcaatcagaagatgattgcccacgccttggcattgctcgatgccaagcccgatgaccgg
gtgttggacctgttctgtggtctgggcaatttcaccctgccgctggcgcgtaccgtgcgc
gaagtcgtgggcgtggagggcgacgccggtttggtggcgcgtgcacgcgagaatgcacag
cgcaacgggctggacaatgcgcagttctacgcagcagacctcacgcaagaccagcggcag
actgcgtggatgcgccagggcttcgacaagctgttgctggatccaccacgctccggcgcc
atcgacgtgttgcagcagctgccgctgaagcagttcaagcgcatcgtctatgtgagctgc
cacccagggtcattggcacgcgatgccggctacctggtgaacgagcagggcttcagcctg
cttagtgccggtgcgatggacatgttcccgcacaccgcccatgtggaaagcatcgcggtg
tttgagaagcgctag
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