Xanthomonas campestris pv. raphani: XCR_1582
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Entry
XCR_1582 CDS
T01872
Name
(GenBank) 2-5 RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
xcp
Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcp03016
]
XCR_1582
Enzymes [BR:
xcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
XCR_1582
Transfer RNA biogenesis [BR:
xcp03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
XCR_1582
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AEL06481
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All DBs
Position
1608680..1609282
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AA seq
200 aa
AA seq
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MQQQFLYLSSAEAQLSLGLGEEKTTERLFFAVMTDAATAKHAAQIGSALLQAGLVEGKPL
APERLHVTLHHLGDYAGGLPPSLVARASQAAERVAQQAFEVEFDRVGTFGGRRSQLPCVL
RGEEQVRGLYDLQGALGRQLAHVGIAGDAQYTPHMTLLYCNQSLPQRRCDPLRWTVTDFA
LVRSFLGQSRYQIEGRWSLR
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagttcctgtacctgtcctccgccgaagcgcagctgtcgctgggcctgggc
gaagaaaagaccaccgagcgcctgttttttgcggtgatgaccgatgccgccactgccaag
catgccgcacagatcggcagtgcgctgctgcaggccgggctggtcgaaggcaagccgctg
gcgccggagcgcttgcatgtcaccttgcatcatctgggcgattacgccggcggcctgcca
ccatcgctggtggcgcgtgccagccaggccgccgaacgcgtggcgcagcaagcgttcgag
gtggagttcgaccgcgtgggcacattcggtggacgccgctcacaactaccgtgcgtattg
cgtggcgaagagcaggtgcgcgggctgtacgacctgcaaggcgcgctgggccggcaactg
gcgcacgtgggcattgccggcgatgcgcaatacaccccgcacatgaccttgctctactgc
aatcagtcgctgccgcaacgccgctgcgacccgttgcgctggaccgtcaccgacttcgcc
ctggtgcgcagctttcttggccagtcgcgttaccagatcgaagggcgctggtcactgcgc
tga
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