Xanthomonas campestris pv. raphani: XCR_1625
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Entry
XCR_1625 CDS
T01872
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03030
DNA replication
xcp03430
Mismatch repair
xcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XCR_1625
03430 Mismatch repair
XCR_1625
03440 Homologous recombination
XCR_1625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcp03032
]
XCR_1625
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1625
Enzymes [BR:
xcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XCR_1625
DNA replication proteins [BR:
xcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XCR_1625
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XCR_1625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEL06524
LinkDB
All DBs
Position
complement(1650449..1654042)
Genome browser
AA seq
1197 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDRDGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFAEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVLPPRVNESAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCMRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILASQQRGGGGGGGDGEKR
AWRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILII
KGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAWSRIDTLLAKHRPGK
TPLRLDLLLRSPAGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTLKVKYSPPWAQ
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgtccatctgcacgtccacaccgagttctcgttggcggattcc
accatccgcgtgcccgagaaaccggatcaggctgacccgaaaaaagccaagcaggccaac
ctgctgagccgcgcggtcgaactcgacctgcccgcgctggcggtcaccgacctgaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggcgccgacgtgatgatcgccacgccggacatgacgccctggcgcatgaccctgctgtgc
cgcgaccgcgacggctacctgagcctgtcgcggctgctcacccgcgcctggatggaaggc
caccgccctgaaggcggcgtggcgatccaccccgaatggctgcaggccgggcatgccaac
ctgttcgccctggccggccgcgacagcctggccgggcggctgttcgccgaaggccgcgcc
gacctggccgagcagcagctcgccgactggcagcgtgtgttcggcgacggcctgcacctg
gaactgacccgcaccggccgcgagggcgaggagcgtttcaaccagttcgcgctgcatgcg
gctggcgtgcgcggcctgccggtggtcgccagcaacgatgtgcgctttctgtatgccagc
gacttcgcggcgcacgaagcgcgcgtgtgcatttcctccggccgcgtgctggacgacccc
aagcgcccgcgcgactacagcgaccagcaatacctcaagtccagcgaggaaatggccgcg
ctgttcgccgatgtgcccgacgccatcgacaacacgctggcgctggcgcagcgctgcaac
atcgagatgcgcctgggcacttacttcctgcccgcctacccggtgccggaagacgaaacc
ctggacagctggattcgcagccagtcgcgcgacggtctggccgcgcgcctggaaaagaat
ccgatcgcgcccggcaagacccgccaggactacgtggaccggcttgaattcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggaaagaaccagggcatcccgatcggcccgggccgcggctccggcgctggctcgctggtg
gcgtgggcgctgcagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcttgaatcctgagcgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtgatcgactacgtcgcgcgcaaatacggccgcgagcgggtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgacgccgggcgcgtgctcggt
ttcacctacggtctggtcgacagcgttgccaagctgatccccaacatcctgggcatcacg
ctcaaggatgcgatgggcgaaggcaaggactcggagatggcttcgccggagctgatccag
cgctaccaggtcgaggacgatgtccgcgacctgatggacctggcgcgccagctcgaagac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgaaccgctgagt
gaattctgcccgctgttcgccgaacacgacgaaggcggccgcggcaagaatccggtcacc
cagttcgacaagaacgacgtggaagaagtcggcctggtgaagttcgacttcctgggcctg
cgcacgctgaccatcatcgattgggcggtgaaggcgatcaacgtgcgccacgcacgtgcc
ggcatcgacccggtcgacatcaccgccattccgctggacgatgcgcccacctacaagggc
gtgttcgcctcgggcaacaccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcgctggtgtcgctgtac
cgccccggcccgatggacctgatcccggacttcaacgcgcgtaagcacggccagcaggag
atcatctatcccgatccgcgcaccgaagcgatcctgaaagacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgttgcgtcgtgcgatgggcaagaaggtgccggccgaaatggccaagcaccgcgaa
attttccgcgaaggcgcggccaagggcggcgtgagcgcgcagaaggccgatgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctatgcg
ctggtcagttaccagaccgcctggctcaagcgtcactatccggccgaattcatggcggcc
acgttgtcctcggacatggacaacaccgacaaggtggtgggcttcctggatgaggtgcgc
aacctcggcctcaccgtgctgccgccgcgcgtcaatgagtcggcctacatgttcgaggcc
gccagcccggacacgatccagtacggtctgggcgcgatcaagggcgttggccagggcgcg
tgcgaggccatcgtcgaagagcgcctgcgcaacggcccctacaccacgctgctggatttc
tgcatgcgcgtgggcaccgcaaagctcaatcgccgcacgctggaagcgatgatcaacgcc
ggtgcgatggacgggctgggcaagaaccgcgcttcgttgatgctgcagttgccggaggtg
atgaaggccaccgagcagatggcacgcgaacgtgcctccggccagaactcgctgttcggt
gggcccgacccgagcgcgccggcgatgcgcctggacctgcccgaaagcaaggaatggccg
ctgggccagttgctcaccggcgaacgcgaaacactgggcttctacctcagcgggcatccg
ttcgatccgcaccgcgacgaagtgcgcgaactggtcggctgcgacctgagcgcgctcgac
aagatcctggcctcgcagcagcgcggcggcggcggtggaggcggcgatggtgaaaagcgc
gcctggcgtcctgaagtcagcgccatcctggccggccaggtggtgggcgtgcgccgcaag
ggcgacagccaggtgttcgtgcaactcgaagatggccgcggccgggtggaatgcagcgcg
ttctccgacgcgatggccgagttcggccacctgctcacccgtgaccgcatcctgatcatc
aagggcggcctgcgcgaggatgagtttaacggcggctacagcctgcgcatccgccaatgc
tgggactacgagcagatctgcgccgaccacgcgcagcggctgtcgttgcgcctggatctg
cgcgagaaacaggcctggtcccgtatcgacacgctgctggccaagcaccgccccggcaag
acgccgctgcgcctggacctgctgctgcgctcgccggccggcggcgtggccggcatgctc
gacctcaacggcagccactcggtgcgcatcgaccagcaactgatggacagcctgcgcgcc
gaccctgccgtgcgcacgttgaaggtcaagtacagcccgccgtgggcgcagtga
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