Xanthomonas campestris pv. raphani: XCR_1829
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Entry
XCR_1829 CDS
T01872
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XCR_1829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_1829
Enzymes [BR:
xcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XCR_1829
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XCR_1829
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XCR_1829
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XCR_1829
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEL06725
LinkDB
All DBs
Position
complement(1860275..1861720)
Genome browser
AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV
TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD
VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV
LPLTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK
APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA
DASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLPPHE
HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHSDDATKQSLLDQLAAWGSDLQRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggatccgcgccgcacc
cgcatcgcgcagttcgctgcggtgcgcaccgatgcgcaactgcgcgtgatcgaagagccg
atcagtttcttcgtgcagccggccgacgatctgttgccctcgccctacgctaccatggtc
accggcatcactccgcagcacgcgctgcgcgagggcgtgaacgaggccgaggcattcgcg
cgcattgccgagcagatgggccgcccgcagacctgcacgctgggctacaactcgatccgc
ttcgatgatgagttcgtacgctgcggcctgttccgcaatttctacgatccctatgagcgt
gagtggcgtggcggcaactcgcgttgggatctgctcgacgtgctgcggttggtgcatgca
ctgcgcccggacggcatcgtgtggccgcagcgcgaggatggcgccacctcgttcaaactg
gagcatctggccgatgccaatgccgtgcgcgaaggcgatgcacatgaagccctgtcggac
gtgtacgccaccatcggcatggcgcgcaagttccagcagagccaacccaaattgtgggac
tacgcgctgcgtctgcgcgacaagcgctttgccgccagcttgctggacgtgattgcgatg
cagccggtgctgcacatctcgcagcgctacccggccacgcgcctgtgcgcggcggcggtg
ttgccgctgacccgtcacccgcgcatcgacagccgcgtgatcgtgttcgacctggacggc
gacccggatgcgctgttgcgcctgagcccggacgagatcgccgaccgcctgtatattcgc
gccgccgatctgcccgaaggcgagcagcgcatcccgctcaaggaagtgcatctgaacaag
gcccccgccctggtggcctggcagcatctgcgtagcgatgacttccagcgcctgggcgtg
gaccgcgccgcggtggaagccaaggccgcgcggttgcgcgaactgggcccggagctggca
gaaaaagtacgccaggtctacggcgccgagcgcgccggggcagcagcggtcaacgacgcc
gacgcctcgctgtatgacggcttcctggccgagggcgacaagcgcctgctgacgcaggtg
cgcagcagcgcgccggccgaactgggcgcactggaagcgcgcttccgcgacccacgcctg
atcgaactgctgttccgctaccgggcgcgcaactggccgcagacacttccgccgcacgag
caccaacgctggaacgattatcgtcggcaacgtctgctggaagaccgcggcctgggcgaa
gtcacgctggaacagttctacgcgcagatcgccgatttacggcttgctcactccgacgat
gctaccaagcaatccctgctcgaccagctcgccgcctggggttcggacctccaacgcacg
ctatga
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