Xanthomonas campestris pv. raphani: XCR_1940
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Entry
XCR_1940 CDS
T01872
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
xcp
Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcp03016
]
XCR_1940 (truD)
Enzymes [BR:
xcp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
XCR_1940 (truD)
Transfer RNA biogenesis [BR:
xcp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
XCR_1940 (truD)
Prokaryotic type
XCR_1940 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
RST
Motif
Other DBs
NCBI-ProteinID:
AEL06833
LinkDB
All DBs
Position
1979398..1980501
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AA seq
367 aa
AA seq
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MSDSPVLPRAHGAAVLTAAMRSVAEDFQVDELPAFDASGEGEHLLLSVRKRGQNTAYVAK
RLAQWAGIAEMGIGYAGLKDRHAVTTQRFSVHLPKRIAPDLSALDDDDMQVVEHTWHNRK
LQRGALHGNRFVLTLREVVGDQAAIDARLHAIAARGIPNWFGEQRFGRDGGNVAAALAMF
GYTRQLDGTLAPAPKRRLRNDQRSLLLSAARSALFNQVLTARVEQGNWDAPLDGEAWMLD
GSRSVFGPEPWSEVLAERLARFDIHPSGPLWGAGELRCSADAAAIEQAALSDPQSLALRT
GLEAAGLKQERRALRLRPQALAHAWLDAQTLQLTFALPPGCYATAVLWELGEVVDAARVA
PQSRSEG
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattcacccgttttgccgcgcgcgcatggcgccgcggtgctcactgcggcaatg
cgcagcgttgccgaggatttccaggttgatgagttgcccgcgttcgatgcatcgggtgaa
ggcgagcatctgctgctgagcgtgcgcaagcgtggccagaacaccgcttacgtggccaag
cgtttggcgcagtgggccggcattgcggagatgggcattggctacgcgggtctgaaggac
cgccacgcggtgaccacgcaacgcttcagcgtacatctgcccaagcgcatcgccccggac
ctgagcgcgctggacgatgacgacatgcaggtggtggagcacacctggcacaaccgcaag
ctgcagcgcggcgccttgcatggcaatcgtttcgtgctgaccctgcgcgaagtggtgggc
gatcaggcggccatcgatgcgcgcctgcacgcgatcgctgcgcgcggcatccccaactgg
tttggcgagcagcgcttcggccgcgatggcggcaatgtcgccgcggcgttggcgatgttc
ggttacacgcggcagctggatggcacgctcgcgccggcacccaaacggcgcctgcgcaac
gatcaacgttcgctgctgttgtcggcagcacgctcggcactgttcaaccaggtgctgact
gcgcgcgtggaacagggcaattgggatgcgccacttgacggcgaggcctggatgctggac
ggctcacgcagcgtgttcggtcccgaaccctggagcgaggtgttggccgagcgcctggcg
cgtttcgacattcatcccagcggcccgttgtggggcgccggcgaattacgctgcagcgct
gatgccgcggcgattgaacaggcggcactgtcggatccgcaatcgcttgcgttgcgcacg
ggcctggaagcggccggcctcaagcaggagcgccgcgcgttgcggctgcgtccgcaggcg
ttggcacatgcctggttggacgcgcagacgctgcagctcaccttcgccttgccaccgggc
tgctacgcaactgcggtgttgtgggaactgggcgaggtcgtcgatgcagcgcgcgttgca
ccgcagtcgcgttccgagggctga
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