Xanthomonas campestris pv. raphani: XCR_2364
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Entry
XCR_2364 CDS
T01872
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCR_2364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_2364
03009 Ribosome biogenesis [BR:
xcp03009
]
XCR_2364
Enzymes [BR:
xcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XCR_2364
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XCR_2364
Ribosome biogenesis [BR:
xcp03009
]
Prokaryotic type
rRNA processing factors
XCR_2364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AEL07248
LinkDB
All DBs
Position
2473320..2476889
Genome browser
AA seq
1189 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEVVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQEFM
QQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPVAPAVTSIKPSQPAPVREEAPA
PVATAPAPAPVVALPLPAPVTGVVGWLKRIFGGVDAPAATPEASQQQRPRQNDAARGNRN
DRGERGGQRRDGRDARNGNGGQHRGNGNGNGANKERRDERRQPTAPQAGSQPQQQQVQVA
KPPRNEPQAPKQPQQGQQPKQPKQQQNQQPRPPRQQDGAPAEKQQRPARQDDAAVAQAVT
ATAATATTASVAAAIADTAAPVSRTVPTHETDAAHPVDVTVTPAASEATADAAAEGHAQD
APAGDDGANGEGGSRRRRGRRGGRRRRRGAGATGEGGTGVDGLESDDLDGDADGDLDNDN
DDAGTPAPTSSAPRAGQPEFDFDDDAGTPPARAQAKVERSPEQQTPVTPRPVPKERAETQ
PQADTATSAAPSVDSAPTTPQQPVITAQSAQVASPETAVSSQAESSQAASQKPAAAPHAA
SASIEAAPAQEQQRAPVQDAPRVAPEAAAPAAAAVQSVRPEVTAPASPVQPAAPTQPAAT
ASVEPSPAAQVTPAPVAPAEAAVVTVTAPHAEPSSTAGKDVDVAVTSTTAVAQPATDTAP
AAPARKPYAPVQTTLLDALAPQSPQAAAPQAQVETAPVAKVSEHSTPAAAAAPVAAQQPA
EARQPTVVMSEASTPAAASPVDAADAADDKDDTEAAASKDDANKPRSDH
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacagaagaagtccaatatctacaag
ggtcgcatcacgcggctcgagccctcgctggaagcggcgttcgtggactatggcgccgag
cgccatggcttcctgccgctgaaggaaatctcccgcgattacttccaggccggtgtcgac
cacaacaagtcgaccatccgtgagctgctgcgtgagggccaggaagtggtggtccaggtc
gacaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcgctcgccgga
cgctacatggtgctgatgcccaattccccgagcgccggtggcgtctcgcgtcggatcgaa
ggcgaggaccgtgccgcactgaaggacgcgctggacaagctcgacatccccgacgacatg
ggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcagtgggatctg
gattacctgctgcagacctggaaggcgattgccgaagccgcgctgagcaagccggcggcg
ttcctgatctaccaggagtcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gacatcggcgaaatcctggtcgatacgccggagctgtatgccgacgcccaggagttcatg
cagcaggtcatgccgcagagcctgcgcaagctcaagcactacaccgacgatatcccgctg
ttcaaccgcttccagatcgagtcgcagatcgaaggcgcctacgagcgcaatgtgcgcctg
ccgtcgggcggctcgatcgtggtcgaccagaccgaagcgctgaccgccgtcgacgtcaac
tcctcgcgcgccaccaagggcagcgacatcgaggaaaccgcgttccagaccaatctggaa
gcggccgaagaagtggcgcgccagttgcgcctgcgtgacctcggcggtctggtggtcatc
gacttcatcgacatggcgtccaccaagcaccagcgcgaagtcgagaacaagctgcagaac
gcgctcaagtacgaccgtgcgcgcgtgcagctgggccggatctcgcgcttcggcctgatg
gagatgagccgccagcgtctgcgtccgagcctgggtgagtccagccagatcgtgtgcccg
cgttgcgacggccatggccgcatgcgcagcgtggaatcgctgtcgctgtcgatcatccgc
gtggctgaagagcacgccatgaaggagaacaccgggcaggtgctggtccaggctccggtg
gagatcgccaattacctgctcaacgaaaagcgcagcgcattacgcgagatcgagcagcgc
catgagtccccgatcatcatcgtggccgacgagcagctgcatactccgcattacgaagtc
acgcgcctgcgtgagaacgagctgggcgaagacagcggcaagccgagctatcagcgcggc
acgccgcgcaagttgccggtgcatgcactgaccaaggcgcagttgaatatcccggtcgcg
ccggcggtgacttcgatcaagccgagccaaccggctccggtgcgtgaagaggcccctgcc
ccggtcgccacggcgccagccccggcaccggtggtggcactgccgctccccgcaccggtc
accggcgtggtgggctggctgaagcgcatcttcggcggtgtcgatgccccggctgcaacg
ccggaagcgtcgcagcagcagcgcccccgtcagaacgacgccgcacgtggcaaccgcaat
gatcgcggcgagcgtggcggacaacgccgtgatggtcgcgatgcgcgcaatggcaatggc
ggccagcaccgcggcaatggcaatggcaacggcgccaacaaggagcgtcgcgacgagcgt
cgccagccgaccgcgccgcaagctggcagccagccgcagcagcagcaagtgcaggtggcc
aagccaccgcgcaacgagccgcaggcacccaagcagccgcagcagggccagcagccaaag
cagccgaagcagcagcaaaaccagcagccgcgtcctccgcgccagcaggatggtgcgccg
gctgaaaagcagcagcgtcccgcacgccaggacgatgcagcagtggcacaggccgtgacc
gcgactgcagcgaccgccaccaccgcaagcgtggcagcggccattgccgataccgccgcg
ccggtgtccaggacggtgccaacgcacgagaccgacgccgcacatccggtcgacgtgacg
gtgacgcccgccgcctccgaggcaactgccgatgccgccgccgagggccatgcccaagac
gcaccggcaggcgatgacggtgccaatggcgagggcggaagccgtcgccgtcgcggccgt
cgcggtggtcgccgccgtcgtcgtggtgcaggcgccacgggtgagggtgggaccggagtg
gatggtcttgagtccgatgatctggacggcgatgccgacggtgatctggacaacgacaac
gacgatgccggtacgccagcaccgacgtcgtccgcgccacgcgccgggcagcccgagttc
gacttcgatgacgatgccggcaccccgcccgctcgggcccaggcaaaggttgagcgcagc
ccggagcagcagacgccggtgacgccacgtccggtgccgaaggagcgagccgaaacgcag
ccgcaggctgatacggcaacgtcagctgcaccgtcggtcgacagcgcaccgactaccccg
cagcagccggtgatcaccgcgcagtcggcacaggttgcctcgcccgaaaccgccgtttcg
tcgcaggcggaatcctcgcaggcagcgtcgcagaaacccgctgcagcaccgcacgccgct
tcggcatcgatcgaggctgcgccagcacaggagcagcagcgcgctcccgtgcaggacgcc
ccgcgtgttgcaccggaggcagcggctccggctgcggctgcggtgcaaagcgttcgtcct
gaagtgactgccccggcctccccggtgcagcctgcagcaccgacgcagcctgccgcgaca
gcgtcggttgagccgtcgcctgcagcgcaggtcacgccggcgcccgttgcgccggccgaa
gctgccgtggtcacggtcaccgcaccgcatgccgaaccgtccagcacggccggcaaggac
gtggatgtcgcagtgacctcgaccaccgcggttgcgcagccggccaccgacaccgcgcca
gcggcgccggcgcgcaagccctacgcgccggtgcagaccaccctgctcgatgcgttggct
ccgcaatcgccgcaagcggcagctccgcaagctcaggtcgagactgctccggtagccaag
gtatctgagcactccacgccggccgctgctgcggcacctgtggctgcgcagcaacctgca
gaggcacggcagccgacggtggtcatgtcggaggcgtccacgccggcagcagcatcgcct
gttgacgctgctgatgcagcggacgacaaggacgacaccgaggccgcagcgtcgaaagac
gatgccaacaagccgcgtagcgatcactga
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