Xanthomonas campestris pv. raphani: XCR_2993
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Entry
XCR_2993 CDS
T01872
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCR_2993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_2993
03009 Ribosome biogenesis [BR:
xcp03009
]
XCR_2993
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCR_2993
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCR_2993
Ribosome biogenesis [BR:
xcp03009
]
Prokaryotic type
rRNA helicases
XCR_2993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEL07858
LinkDB
All DBs
Position
complement(3166124..3168052)
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AA seq
642 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD
GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
AAASKPKFPRGPKPAGRPNRPMDRAGAPHRKGPPKPRGPRSE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcagatgctgtg
atgaaggcggttgccgccgtcggctacgagaccccttcgccgatccaggccgccaccata
ccggcgctgctggccggtcgcgacgtgctcggccaggcccagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgaaccaggtcaagccgcaggcg
ctggtgctggcgccgacgcgcgagctggccatccaggtggccgaagccttccagaaatat
gccgaagccatccccggtttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctcagcgcgctcaagcgcggcgtgcatgtggtggtgggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctc
ccggaaaagcgccaggtggcgctgttctccgcgaccatgccgccggcgatccgccgcatt
gcgcagacctatctgaaagacccggccgaagtcaccatcgcggccaagaccaccacctcg
gccaatatccgccagcgctactggtgggtgagcggcctgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgacggcatgatcattttcgcgcgcaccaaggccgcc
accgaagagctggcgcaaaagctgcaggcgcgcggtctggccgcggccgccatcaatggc
gacatgcagcaggccgcccgtgaaaagaccatcgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggaacgcgtcagccacgtg
ctgaactacgacattccgtacgacaccgaaagctacgtgcaccgtatcggccgcaccggc
cgcgccggccgcaacggcgacgcgatcctgttcgtcaccccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccctggccggc
ggtcagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgacatcgccgcggcgatggccaagctgctgcagggcgatgccccgttcctgctg
actccgccggtgcgtggcgcgcgcgaagacttcgcaccgcgtgagcgcaacgaccgcgcc
gaccgtggcgagcgcccgcgcttcgagcccaagttcgagcgtggcccgcgtgcgcccgac
ggcgagcgtggtgcacgtccgccgcgtccggatcgcccggcctatggtgaagacgccggc
gccgagcgtccgcgccgtgagccgagcgcaccgcgcggcgagccggagttcggcatggag
agctaccgcatcgaagtgggccacacccatggcgtgaagccggccaacatcgtcggcgcc
atcgccaacgaagccggcctggaaagccgctatatcggccgcatcgacatccaggacgat
tactcgatcctggacctgccggccgacatgccgcgcgaactgctgacgcacctgaagaag
gtctgggtgtcgggccagcagctcaacatgcgcaagctggaagagggcgaggcggccgct
gcggcggcgtccaagcccaagttcccgcgtggccccaagccggcaggccggcccaaccgg
ccgatggaccgcgccggcgcgccgcaccgcaagggtccgcccaagccgcgtggcccgcgc
agcgagtaa
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