Xanthomonas campestris pv. raphani: XCR_3004
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Entry
XCR_3004 CDS
T01872
Name
(GenBank) DNA methylation and regulatory protein Ada
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XCR_3004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xcp03000
]
XCR_3004
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_3004
Enzymes [BR:
xcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
XCR_3004
Transcription factors [BR:
xcp03000
]
Prokaryotic type
Helix-turn-helix
AraC family
XCR_3004
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XCR_3004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_Tnp_ISL3
OGG_N
Motif
Other DBs
NCBI-ProteinID:
AEL07869
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All DBs
Position
3174361..3175824
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AA seq
487 aa
AA seq
DB search
MHTAMPDRTHCDRARLARDARFDGLFFTAVRSTGIYCRPVCPAPPPKPANISYYPTAAAA
TAAGYRPCLRCRPELSPQAQQHLGEESVQRALAMLAEGVLQEQPVQALADAVGVSARQLQ
RQFVQQLGATPLQVHGTRRLLLAKQLLTETALPVTEVALAAGFNSLRRFNAAFLQGCGMP
PSALRKQRNDVPGGDLCLRLGYRPPLDLSAMLAFLQRRAIPGIEQVDADGYRRMIGAPGQ
ATLIHVSAAPTRDELLLRIGPTDPRQIPQIVRRVRRIFDLDADLQAVHATLAQDPLLEQA
IARRPGLRVPGGWDGFEVAVRAVLGQQISVAGAATLAARLVDRHGGHLPDMPPGLDRSFP
TPAVLADAPLEHLGLPRARAATLRALALACADGRLHFGSGQRLKDFVAACTALPGIGPWT
AHYIAMRALSHPDAFPAGDLILQQVLGAPERLSERATEARSQAWRPWRAYAVLHLWHLAV
DRKDTRS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgccatgcccgaccggacccactgcgaccgcgcgcgactggcgcgcgatgcg
cgctttgatgggctgttttttaccgccgtgcgcagtaccggcatctactgccggccggtg
tgcccggcgccgccgcccaagccggccaatatcagctactaccccaccgctgcagcggcc
accgcggccggttatcgcccgtgcctgcgctgccggccggagctgtcaccgcaggcgcag
cagcacctgggcgaagaaagcgtgcaacgggcactggcgatgctggccgagggcgtgctg
caggagcagccggtgcaggccctggccgatgcggtgggcgtgagcgcgcggcagttgcag
cgccagttcgtgcagcaactcggtgccaccccgctgcaggtgcatggcacgcgccggctg
ctgctggccaagcaactgctcaccgaaaccgccctgccggtcaccgaagtggcactggcc
gccggcttcaatagcctgcggcgtttcaacgcggcctttctgcaaggctgtggcatgccg
ccgtcggcgttgcgcaagcaacgcaacgacgtgcccggcggcgacctgtgtctgcggctg
ggctatcgcccgccattggatttgtcggcgatgctcgcgtttctgcagcgccgcgccatt
cccggcatcgagcaagtggatgccgatggataccggcgcatgattggcgcgcctggccag
gccacgttgatccatgtcagcgctgcaccaacgcgcgacgaactactgctgcggatcggc
cccaccgacccgcgccagatcccgcagatcgtgcgacgcgtgcgccggatcttcgacctg
gatgcagacctgcaggccgtgcatgccacgctcgcgcaggacccgctgctggaacaggcc
atcgcccgccgcccgggcttgcgggtgcccggtggctgggacggattcgaagtcgcggtg
cgcgcggtgttggggcagcagatcagcgtggccggcgcggccaccctggcggcgcggttg
gtggaccggcatggcggccatctccccgacatgccacccgggctggatcgcagtttcccc
acgccggccgtactggccgacgcgcccctggaacacctcggcctgccgcgcgcacgtgcc
gccacgttgcgcgcgcttgccctggcctgcgccgatggccgcctgcatttcggttcggga
caacgcctgaaagacttcgtcgcggcatgcactgccctgcccggcatcggcccatggacc
gcgcactacatcgcgatgcgcgccctgtcgcatcccgatgcgtttccggcaggagatctg
atcctgcaacaggtgctcggtgcccccgagcgcctgagcgaacgtgctaccgaagcgcgc
tcgcaggcatggcggccctggcgcgcctacgccgtgctgcacctgtggcatcttgccgtc
gaccgaaaggacacccgctcatga
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