Xanthomonas campestris pv. raphani: XCR_3058
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Entry
XCR_3058 CDS
T01872
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XCR_3058 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_3058 (mfd)
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XCR_3058 (mfd)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XCR_3058 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEL07923
LinkDB
All DBs
Position
3228335..3231802
Genome browser
AA seq
1155 aa
AA seq
DB search
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEA
DLHALLGDASTLPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTL
LQQLAPLSYIFGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRE
RFDVDTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADA
FWLQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRIDEAAPLG
DQPLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVAD
LPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVGREPEAII
RDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYE
PFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSE
LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVAS
LIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQA
NALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAAD
RFNAARGLLTALAPR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctaccttcccttctccgccgctgcccaagtccggccagctccgcgcctac
tggcgcgctccgtcgtctccgacggccctggcctggtcgattgcacgcgctgccgaagcg
catgccggcccggtgctggtgattgcccgcgacaaccagagcgcgcatcagatcgaagcc
gatctgcacgccctgctgggtgacgcgtccacgctgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcacccggaaatcatcagccagcgcctggcg
gccctgcatcgcttgcccggtctgacccgtggcgtggtgatcgtgccggtgcagacattg
ctgcaacagctggcaccgctgagctacatcttcggtggcagcttcgatctcacggttggt
cagcgcctggatctggacgcggaaaaacgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgatttcgcggtgcgcggcggcctgctggacgtgtttccg
atgggcgccgacaccccgttgcgcatcgaactgctggatgaggatatcgattccatccgc
gccttcgacccggaatcgcagcgctcgctggacaaggtggacgcggtcaagatgctgccc
ggccgcgaagtgccgatggacgatgccagcgtggagcgtgtgctcgcctgcctgcgcgaa
cgcttcgacgtggatacgcggcgcagcgcgctgtatcaggatctgaagtccggcatcgca
ccgtcgggcgtcgagtattacctgccgatgttcttcagcaagactgccacgctgttcgat
tatctggacacgcgcgtgctgccgctgatcgccaccggcgtctccaatgcggccgatgcc
ttctggctgcaggcgcaaaaccgctatgagcagcgccgccacgatgtggaacgcccgcta
ttgccgcccgatgagctgtaccagtcaccggatgccttgcgcgagcggctcaacaagctg
gcgcgcatcgaagtgtggccggccgaccatccgcgtatcgacgaggccgcgccgctgggc
gaccagccgttgccgccgctgccggtcgccgccaaggatgcgcccgccgggcaggccctg
gcctcgttcctgggccattacccgggccgggtgctggtagccgccgattcggccggccgc
cgcgaagccttgatggaagtgctggccgccgcgcagttgaagccggacgtcgtggccgac
ctgcccgcgttcctggccgcgaccaaactgcgcttcggcatcaccgtggcgccgctggaa
gacggctttgcattggacacgccgcagattgcggtgctgaccgagcgccagttgttcccg
gagcgggccaaccaaccgcgccgcacgcgccgtgtgggccgcgagccggaagcgatcatc
cgcgacctgggagagctctccgaaggcgcgccgatcgtgcatgaagaccacggcgtgggc
cgctaccgcggcctcatcgtgctcgacgccggcggcatgcctggcgagtttctggaaatc
gaatacgccaagggcgaccggctgtatgtgccggtagcgcagctgcacttgatcagccgc
tattccggtgcctcggccgacaccgcgccgctgcattcgctgggcggcgagcaatggacc
aaggccaagcgcaaggccgccgaaaaggtgcgcgatgtcgccgccgaattgctggaaatc
caggcgcgccgccgcgcgcgcgcaggcctggcgctgcaggtggatcgcgcgatgtacgaa
ccattcgcggcgggctttccgttcgaggaaaccaccgaccagttggccgcgatcgatgcc
accttgcgcgatctgggcagcagccagccgatggaccgcgtggtctgcggcgacgtgggc
ttcggcaagaccgaagtcgcggtgcgcgccgcgttcgccgcggccagtgccggcaagcag
gtcgccgtgctggtgccgaccacgctgctggccgaacagcattaccgtaacttccgcgac
cgcttcgccgactacccgatgaaggtggaagtgctgtcgcgcttcaagagcaccaaggag
atcaaggccgagctggagaaagtggccagcggcgatatcgacgtgatcatcggcacgcac
cggctgctgcagccggacgtgaagttcaaggatctcggcctggtcgtggtggacgaagaa
cagcgcttcggcgtgcgtcagaaagaagcgctcaaggcgatgcgcgccaacgtgcatctg
ctcacgctcaccgccacgccgatcccgcgcacgctcaacatggccatggccgggctgcgc
gatctgtccatcatcgccaccccgccgccgaaccggctcgcggtgcagaccttcatcacc
gcctgggacaacacgctgctgcgcgaggcgttccagcgcgaactcagccgcggtggccag
ctgtatttcctgcacaacgatgtggaaagcatcgtgcgcatgcagcgcgacctgtccgag
ctggtgccggaagcgcgcatcggcatcgcgcatgggcaaatgcccgagcgcgagctggaa
cgggtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatc
gaatcgggcatcgacattcccaacgccaacaccatcatcatcaaccgcgcagatcgcttt
ggtcttgcgcagttgcatcagctgcgcggccgcgtggggcgttcccaccaccgcgcctat
gcgtatctggtggtgccggaccgccgctcgatgacctccgatgcagaaaagcgcctggaa
gcgattgcctccatggacgagctgggcgccggcttcaccctggccacgcacgatctggag
atccgtggtgccggcgagctgctgggcgaggaccagagcgggcagatggccgaggtgggt
ttcagcctgtacaccgaactgctggaacgcgcggtgcgcagcatccgccagggcaagctg
ccggatctggatgccggcgaagaagtgcgcggcgccgaggtggaactgcacgtggcctcg
ctgattcccgaggactacctgcccgatgtacacacgcgcctgaccctgtacaagcgcatt
tccagtgcccgcgacagcgatgccttgcgcgagctgcaggtggaaatgatcgatcgcttc
ggcctgctgccggacccggtcaagcacctgttcgcgatcgccgagctcaagttgcaggcc
aatgccttgggtgtgcgcaagctggatcttggcgagaatggcggccggctggtgttcgag
gccaaaccgtcgatcgacccgatgaccgtgatccagatgatccagaagcagccgaagatc
tacaccatggatggcccggacaaactgcgcatcaagctgccgttgcccgaggctgccgac
cgcttcaatgcggcacgtgggctgctgaccgccctggcaccgcgctga
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