Xanthomonas campestris pv. raphani: XCR_3173
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Entry
XCR_3173 CDS
T01872
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp02020
Two-component system
xcp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XCR_3173 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XCR_3173 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcp03021
]
XCR_3173 (rpoN)
Transcription machinery [BR:
xcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XCR_3173 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_38
HTH_IclR
HTH_23
Sigma70_r4
HTH_AsnC-type
Sigma70_r4_2
HTH_11
MarR
Motif
Other DBs
NCBI-ProteinID:
AEL08037
LinkDB
All DBs
Position
3337572..3338966
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AA seq
464 aa
AA seq
DB search
MTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVEPSPSASNEERQ
RDEPAPAERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPL
SPRDRQIGAILINALDEDGYLREPLSAILETLNLGNVDEAEVLTVLHQIQRFDPVGIGAR
SLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHELKRSAADVEQAVQLV
RSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGE
SDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGE
LGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEASSTAIQAMIRRLIDAENP
RKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcaattgcgtcaggcgatcaaactattgcagatgtccaccaccgagctggaa
gtggaaatcgccgaagcggtggagaccaatccactgctggagtgggccgacgaagccgcg
cacgcggccagcgaggcgccagtcgaaccgtcgccctccgcctccaacgaagaacgccaa
cgcgacgagcctgcgcctgccgagcgcgacgacgactggtcgcaggacgagctgcagtgg
accggcactggcagtggcggcagcttcgacgatgacgacaacggcgacgccgccgaacgc
gtggccgagtccgaaaccctggccgaccacctgttgtggcagttgcacctgtcaccgttg
tcgccaagggaccgccagatcggcgcgatcctgatcaatgccctggacgaagacggctac
ctgcgcgagccgctcagcgcgattctggagacgctcaaccttggcaacgtggacgaggcc
gaagtgctcaccgtgctgcaccagatccagcgcttcgacccggtgggcatcggcgcacgc
tcgctgggcgaatgtctggcgctgcagctgcaggtgctcgatgcggcgacgccggcgcgc
gagctggcgctgcagatcgtggccgggccgctggagcggctgccgcgcagcggcattgcc
ggcctggcccacgaactcaagcgctctgccgccgatgtcgagcaggccgtgcaactggtg
cgctcgctggacccgcgcccgggcaagcagatcagcgcgctgtcgcaggacacctacgta
gtgccggactgtgtgatctggcgccagcgtggcgtctggcgcgccgccctggccggccgc
gcgcaacccaaggtgaccatccaccgcggctacgagcaactgatccgcagctgcggtgaa
tccgacgccggctacctgcgcggccagctacaggaagcgcgctggctgctcaagagcctg
gaggcgcgcggcgagaccctgctgcgggtggtgcgctgcctgctgcagcaccaggccggg
ttcctggagttcggcgcgcaagcgctgcgcccgctgaccctgcgcgagatcgccggtgag
ctgggcctgcacgaatcgacgatttcgcgtgccattgcccgcaagtacgtgcgcacgccg
cgcggcaccatcccgctgcgctcgttctttgcctccggcatcgacaccgacagcggcggc
gaggcttccagcacggcgatccaggcgatgatccggcgcctgatcgatgcggaaaacccg
cgcaagccgctgtcggacgccaagttggcagatctgttgaaaacttccggcgtaccagta
gcgcgccgaaccgttgcgaagtatcgtgaggccatgaatatttccgcctcccacgaacgc
gtgcgcatcgcctga
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