Xanthomonas campestris pv. raphani: XCR_3316
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Entry
XCR_3316 CDS
T01872
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xcp
Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_3316 (hrpA)
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XCR_3316 (hrpA)
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XCR_3316 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
NACHT
AAA_23
Cas3-like_C_2
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AEL08179
LinkDB
All DBs
Position
complement(3513329..3517378)
Genome browser
AA seq
1349 aa
AA seq
DB search
MSRDRGRLLGLWSRWQGNPGNPQLRQAFEQALAASQAQRQARAAQQPAITLDTQLPIARE
ADRIIALIRDHPVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIAARAVAARV
AEELNTPLGTTVGFQVRFTDRVGEDSRIKFMTDGILLAEIASDRWLSAYDTIIVDEAHER
SLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTERFSRHFDDAPVINVEGRTFPVEVRYRP
LEGESGDGDTGDGGRDGERTVNDAIVAAIDEITRIDPRGDVLMFLPGEREIRDAHQSLER
RKYRETEVVPLYARLSAADQDRVFNPGPRRRLVLATNVAETSLTVPRIRYVVDPGYARVK
RYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGICYRLYAEADFAARPAFTDPEIRRAS
LSGVILRMLQLGLGRIEEFPFLEAPDERAVADGWQQLLELGAIDAERRLTAIGRQMARLP
VDVKLARMLVAAQQHGCLREMIIVAAFLGIQDPRERPPEAREAADNAHALFADARSEFVG
ILRLWDAYRQVHEDLTQSKLRDWCGRHFLGFLRMREWRELHRQLRLLCEELGWSEEPAGA
MLAPLLAGASAPVREDGQAHRATRGQLHRAARLAREGKPDPAAPPAQAKAAAAKSPPADA
TDAAVRTTERERAAAYQALHRALLAGLPTQIGHRTEKGDYLAARQRRFVPFPGSALARKP
PPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLLARKHFDPHWSRAQGQVVASEQISL
FGLVLAPKKPVHFGKIDPATSHDLFVRQGLVPGEINTRAAFVADNLKVLEQAREEEAKLR
RAGIVADEDWQARWYLDRIPAELHSASGLDAWWKTLPADKRRSLHWSLNDLLPGEGSEAD
RFPKYFALGDARLPLQYRFEPGAIDDGVTLEVPLHLLNALDPSRLSWLAPGFVADKASAL
IRSLPKAQRRNYVPAPDYGRAFYEAFSTPSVDDMRGELARFLSKATGAPVAALDFDEEAL
DTHLLMNLRLRDEDGRVLAESRDLEGLRARFGERAGQAFAARAGRALAAEGLRDFPATPI
PEQVAGEAGVPAYPALVDQGEDAALRIFADRNEALRAHPRGVRRLLEIALADKIKQARKQ
LPVSPKTGLLYAAIESQERLRGDLVDAALNAVLAEGLGAIRDPAAFAQRREDAVKRLFGE
AMARLTLAESILGAVAELKPLLEAPLMGWARGNLDDMEQQLRALVHAGFLRDTPADALAN
YPRYLKAMILRTERAKRDPARDQARMLELKPFVDALNDAAARGLQQHPDWQALRWDLEEL
RVSVFAQELGAKSGVSAKKLSQRVAALRG
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgatcgtggccgtttgctgggcctatggtcgcgctggcaaggcaatcccggc
aacccgcagctgcgccaggccttcgaacaggcgctggccgcctcgcaggcgcaacggcag
gcgcgtgccgcgcagcagccggcgatcacgctggatacgcaactgccgatcgcgcgcgaa
gccgatcgcatcatcgcgctcatccgtgaccatccggtggtggtgattgccggtgagacc
ggttcgggcaagaccacccagttgcccaagctgtgcctggcagccgggcggggtgcggcc
ggcatgatcggctgcacgcagccgcggcgtatcgctgcgcgcgcggtggccgcgcgcgtg
gctgaagaactcaacaccccgttgggcaccacggtggggttccaggtgcgcttcaccgat
cgcgtgggtgaggactcgcgcatcaagttcatgaccgacggcattttgctggcggagatc
gccagcgaccggtggttgtccgcctacgacaccatcatcgtggacgaagcgcatgagcgc
agcctcaacatcgacttcctgctgggctatctcaagcagctgctgcgcaagcgtcccgac
ctcaagttgatcgtcacttcggccaccatcgacaccgagcggttctcgcggcatttcgat
gacgcgccggtgatcaacgtggaaggccgcaccttcccggtggaggtgcgctaccgcccg
ctcgaaggcgagtctggcgacggcgacaccggcgatggtgggcgcgatggcgaacgcacc
gtcaacgacgccatcgtggcggcgatcgacgaaatcacccgcatcgacccgcgtggcgat
gtgcttatgtttctgccgggcgagcgcgagattcgcgatgcgcaccagtcgctggagcgg
cgcaaataccgcgagaccgaagtggtgccgctgtacgcgcggctgtcggcggccgaccag
gaccgcgtgttcaacccgggcccgcgccggcgcctggtgctggccaccaacgtggccgaa
acctcgctgacggtgccgcgcatccgctacgtggtggatccgggctatgcgcgcgtcaag
cgctacagcccgcggcagaagctggaccggctgcatatcgagccgatttcgcaggccagc
gccaaccagcgcatgggccgctgcgggcgtatcgccgagggcatctgttaccggctgtac
gcggaggcggatttcgccgcacgcccggccttcaccgacccggaaatccggcgcgcgtcg
ttgtcgggcgtgatcctgcgcatgctgcagttggggctggggcgcatcgaggagtttccg
tttctggaagcgccggacgaacgcgccgtggccgatggctggcagcagctgctggagttg
ggcgcgatcgatgccgagcggcggctgacggcgatcggccggcagatggcgcgcctgccg
gtggacgtcaaactggcgcgcatgctggtggccgcgcaacagcacggttgcctgcgcgag
atgatcatcgtcgccgcgttcctgggtatccaggatccgcgcgagcgcccgccggaagcg
cgcgaagccgccgataacgcgcatgcgctgtttgccgatgcgcgctcggagttcgtcggc
atcctgcgcctgtgggacgcctatcggcaggtgcacgaagacctcacccagtccaagttg
cgcgattggtgcggccggcattttctcggcttcctgcgcatgcgcgagtggcgcgaactg
caccgccagttgcgcttgctatgcgaagaactgggctggagtgaagagccggccggcgcg
atgctggcgccgctgctggccggtgccagcgcgccggtgcgcgaggatgggcaggcgcac
cgcgccacccgtgggcagctgcaccgtgctgcgcggctggcgcgcgaaggcaagccggat
ccggcggcgccacccgcgcaggcgaaggccgcggctgcaaagagcccacctgccgatgcc
accgacgcggcggtgcgcaccaccgagcgcgaacgtgctgccgcctaccaggccttgcac
cgcgcactgctggcgggcctgccgacgcagattggccaccgcactgaaaaaggcgattac
ctggccgcgcggcagcgccgtttcgtgccgtttccgggctccgcgttggcacgcaagccg
ccaccgtggattcttgcggcgaccttgctcgacacccagaaggtgtggggcatgaccaat
gcggcgatcgagccggactgggcgattgccgagttgccgcacttgctggcacgcaagcat
ttcgacccgcactggtcgcgtgcgcaagggcaggtggtggcctccgagcagatcagtctg
ttcggcctggtgctggcgccgaagaagccggtgcacttcggcaagatcgaccccgccacc
tcgcacgacctgttcgtgcggcagggcctggtgccgggcgaaatcaacacgcgtgcggcg
tttgtcgccgataacctcaaggtgctggaacaggcgcgcgaagaggaagccaagctgcgc
cgcgccggcatcgtggccgacgaagactggcaggcgcgctggtatctggaccgcattccg
gccgagctgcattcggccagtggcctggatgcgtggtggaagaccttgcctgccgacaag
cgccgcagcctgcactggtcgttgaacgatctgctgcccggcgaaggcagcgaggcggac
cggttcccgaagtatttcgcgctgggcgatgcgcggttgccgttgcagtaccgcttcgag
ccgggggccatcgacgatggcgtgacgctcgaggtgccgttgcatctgctcaatgcgctg
gatccgtcgcgcttgtcgtggctggcgcccgggtttgtggccgacaaggcgtcggcgctg
atccgcagcctgcccaaggcacagcggcgcaattacgtaccggcgccggattacggccgc
gcgttctacgaggccttcagcacgccatcggtggacgatatgcgcggcgagctggcgcgc
ttcttgagcaaggccaccggtgcgccggtggcggcgctggatttcgatgaagaagcgctg
gacacgcacttgctgatgaacctgcggctgcgtgacgaggacggcagggtgctggccgaa
tcgcgcgatctggaaggcttacgtgcgcgctttggcgagcgtgccgggcaggcctttgcc
gcgcgtgccggacgcgcgctggcagcggaagggctgcgcgatttcccggccacgccgatc
cccgaacaggtggccggcgaagcgggcgtgcctgcgtatccggcgttagtggatcagggc
gaggatgccgcgctgcggatctttgccgaccgcaacgaagcgctgcgtgcgcatccgcgt
ggtgtgcgccggctgctggaaattgccttggccgacaagatcaagcaggcgcgcaagcag
ctgccggtgtcgcccaagacggggttgttgtatgcagcgatcgaatcgcaggagcgcctg
cgcggcgatctggtggatgcggcgctcaatgcggtgctggccgagggactgggtgcgatc
cgcgaccctgccgcgttcgcacagcgccgcgaggatgcggtcaagcggctgtttggcgaa
gcaatggcacggttgacgctggcagagagcattctcggcgcggtggccgaactcaagcct
ttactggaagcaccgttgatgggctgggcgcgcggcaatctggatgacatggaacagcaa
ttgcgcgcgctggtgcatgccgggttcctgcgcgacacgccggccgatgcgctggccaat
tatccgcgctatctcaaggcgatgatcctgcgcaccgaacgcgccaagcgcgaccccgcg
cgcgaccaggcacgcatgctcgagctcaagccgttcgtggatgcactcaacgacgccgcg
gcgcgtgggctgcaacagcacccggattggcaggcgctgcgctgggatctggaagaactg
cgggtgtcggtatttgcgcaggagctgggcgccaaatccggcgtctcggcgaaaaagttg
tcgcaacgcgtggcggccttgcgagggtaa
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