Xanthomonas campestris pv. raphani: XCR_3319
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Entry
XCR_3319 CDS
T01872
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCR_3319 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcp03019
]
XCR_3319 (recQ)
03400 DNA repair and recombination proteins [BR:
xcp03400
]
XCR_3319 (recQ)
Enzymes [BR:
xcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XCR_3319 (recQ)
Messenger RNA biogenesis [BR:
xcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCR_3319 (recQ)
DNA repair and recombination proteins [BR:
xcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XCR_3319 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEL08182
LinkDB
All DBs
Position
3518412..3520214
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AA seq
600 aa
AA seq
DB search
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENTQRVERALLSGDLDLLYVAPERLLT
PRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMALTATADPPT
QREIAERLDLVEARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLGHDQLSTYGIGRDMDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRERDRGAQRTGLPVQPQDLGLFNALRGLR
AELAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgcacacgaactgctcagccgcgtcttcggttacgacgatttccgcggc
ccccagcaagccattgtcgaacacgtcgccgccggcaacgacgcgctggtcctgatgccc
accggtggcggcaagtcgctgtgctaccaggtcccggcgctgttgcgcgacggcatcggc
atcgtggtgtcgccgctgatcgccctgatgcaggaccaggtggaagccctgcgccagctc
ggtgtacgcgccgaattcctcaactccaccctggatgcggaaaacacccagcgggtggaa
cgcgccctgctctcgggcgatctggacctgctgtatgtggcaccggaacgactgctcacc
ccgcgcttcctgtcgctgctggaacgtagccgcatcgccttgttcgccatcgacgaagcg
cactgcgtgtcgcaatggggccacgacttccgcccggagtaccgccagctcaccgtgctg
cacgagcgttggccacacattccgcggatggcattgacggcaaccgccgacccgcccacc
caacgcgagatcgccgagcgcctggacctggtggaggcgcgccacttcgtcagctcgttc
gaccgccccaacatccgctacaccgtggtgcagaaggacaacgcgcgcaagcagttgcag
gagttcctgggccgccaccgcggctcggccggcatcgtctatgcgatgtcgcggcgcaag
gtggaagaaaccgcgcaacagctgtgtgcgcaaggcttcaatgccctgccctaccacgcc
ggcctgccggcggaagtgcgcgcggagaaccagcgccgcttcctgcgcgaggacggcatc
atcatggccgccacgatcgccttcggcatgggcatcgacaagccagacgtgcggttcgta
gcgcacgtggacctgcccaaatcgatggaaggctattaccaggaaaccgggcgtgccggc
cgcgatggcgagcccgcggaggcatggctctgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgaacaaggtgaggccgcagaggagcgcaagcgcctggaacgcgccaag
ctcgatcacctgctcggctactgcgagtccatgcagtgccgccgccaggtgctgctggcc
ggcttcggcgaaacctatcccaagccctgcggcaactgcgacaactgcctgacaccggct
gccgcctgggacgccaccgtggcctcgcagaaggcgctgagctgcgtgtaccgcagcggg
cagcgcttcggcgtgggccatctgatcgacatcctgcgcggcagcgagaacgagcgcatc
aagcagctcggccacgaccagctgagcacctacggcatcggccgcgacatggacgagcgc
acttggcgcggcgtgttccgccagctggtggccgccagcctgttggaagtcgacagcgaa
ggccatggcggcctgcgcctcaccgatgccagccgccaggtgctcaagggcgagcgacag
gtgatgatgcggcgcgaaaacccggctgccgggcgagagcgcgaccgcggcgcgcaacgc
accgggctgccggtgcagccgcaggacctggggctgttcaatgccttgcgcggcctgcgc
gcggagctggcgaaggagcagaacgtgccggcgttcgtgatcttccacgacagcacactg
cgcaatatcgccgaacaacggccaaccagcatcgacgccctctcgcgtgtgggcggcatc
ggcggcggcaaactggcccgttacggtgcgcaactgatcgagatcgtgcgcgaacagggc
tga
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