Xanthomonas campestris pv. raphani: XCR_3500
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Entry
XCR_3500 CDS
T01872
Name
(GenBank) glycosyl hydrolase
Organism
xcp
Xanthomonas campestris pv. raphani
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Gene cluster
GFIT
Motif
Pfam:
Ig_GlcNase
Glyco_hydro_2
Glyco_hydro_2_N
Laminin_G_3
Glyco_hydro_2_C
Ig_mannosidase
Mannosidase_ig
BetaGal_ABD2
BetaGal_gal-bd
3keto-disac_hyd
Docking
Laminin_G_1
Motif
Other DBs
NCBI-ProteinID:
AEL08361
UniProt:
G0CDS8
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Position
complement(3717367..3720831)
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AA seq
1154 aa
AA seq
DB search
MLMVRKAFRRGALWLLCGCVGWTAVEAAPAKVDPPGPYDVRVLAGGVGLSKTLAADAPML
AADADWSVSGWVRPAMDVPGTVRIAGLGDAHGDGRFFVIDNGRLGFAQGDAVLRSKQALP
VGTWTQIAAVAQGARLTLYANGRQVASGTRVSRAVAPALVFGPRVPADAASLHFGGDIAN
FTARAGALDAAAIVQQARHAPNEILQRFEDASPGWRVQTKQMAGQLEPQPAATLPRSAAP
FSAPLAKPVTNAPALQPLDALSWRVGGWQLAAAPDLGTRGGAELSRGAAPSSSAWHVATV
PGTVLTTLVDRGVYPDPDIGLNNMAIPESLSRQDWWYRSTFELPAGTQGKRLELVFNGIN
YAGEIWVNGVQVGHTRGAFARGRFDVSSYLTPGRNAIAVRVSPPPHPGIAHEQSMTAGVG
ENGGMQALDGPTFIASEGWDWIPAVRDRNAGLWQDVQLHATGPLAVGDTHVVTAKLAPDH
RRAELEIAVPLRNTSSAAVQGTVQLAFGDVRIQREVNVPAGGTTLTLTAADTPELVVTNP
RLWWPNGYGEPSLYTLQVGVAAGGVQSDLQQLRFGIREVTYELSLFDERGALRRVLVDLN
QARQRGERIVDVRHAAIRPVPGGNAQSLYPGALASPAVTQLDDSTLAPHLVLRINGVRIA
VKGGNWGMDDWRKRVSRERLEPYFRLQRDAHFNVVRNWVGQNTEASFFDLADEYGMLVLN
DFWQSTQNYNMEPADAALFLANAAEVITRFRNHPSIVLWFGRNEGVPAPILNEGLDALVA
ALDGTRWYTGSSNEVNLQGSGPYNYREPVAYFNKLAQGFSVEVGTPSFSTLESFKASVPA
VQDQWPISDSWAYHDWHQSGNGDTASFMRSLSDKLGAPTSLDDFERKAQLLNYETHRAIF
EGFNAQLWTKNSGRLLWMSHPAWPSNMWQIYSHDYDTHAAYYGVRNAAEPLHVQMNLPGH
EVVVVNNTTTAVRGLRVRAETYAADGRLLQQREQAVDATAVAVSAPVLQLAPLLADAKEL
GFVRLQLLEHDGTVRSRNFYWVARDAAAMRGLDALAPVPLELTTQLQAGGAPVLSATVRN
PSQHVALGAKLTLVDAQGQRILPAYYSDNYLNLAPGESRTVEIRGPAEASLRAARVQLRG
WNLAPSSGTASGSP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgctgatggttcgcaaggcgttccgccgtggagcgctgtggctgttgtgtggttgcgtg
ggctggactgcagtggaggctgcacccgccaaggtcgatccgcccggtccttatgacgtg
cgcgtgctcgcaggcggcgttggcttgagcaagacgctggccgccgatgcaccgatgctg
gcggccgacgcagactggagtgtgtccggttgggtgcgtcctgccatggacgtgcccggt
accgtgcgcattgcaggtctaggtgatgcgcacggcgacgggcgcttcttcgtgatcgac
aacggccgtcttggttttgcccaaggcgatgccgtgctgcgcagcaaacaggcgttgccg
gtaggtacgtggacgcaaattgcagcggtggcgcaaggtgcacggctgacgctgtatgcc
aatggacgccaggtggccagtggcacgcgcgtgtcacgtgcggtggcgccggcgctggtc
ttcggcccacgcgtgccggccgatgccgcgtcgctgcacttcggtggcgacatcgccaat
ttcactgcgcgcgccggtgcgctcgatgcagctgctattgtgcagcaggcacggcacgcg
ccgaatgaaatattgcagcgcttcgaagatgcgtcgccaggctggcgcgtgcagaccaaa
cagatggctgggcagctcgaaccgcaaccggccgccacgctgccacgcagcgccgcaccg
ttctccgcaccgttggccaagcccgtcaccaacgcgcccgcattgcagccgctggatgcg
ctgtcatggcgcgtgggtggctggcagctggccgctgcgcctgacctcggcacgcgtggt
ggtgccgagctgtcgcgtggcgctgcaccttccagtagcgcatggcatgtggccacggtg
ccgggcacggtgctcaccacgctggtcgatcgcggcgtgtatccagatccggatatcggc
ctcaacaacatggccattcccgaatcgctgagtcgccaggactggtggtaccgcagcacc
ttcgagttgcctgccggcacgcagggcaagcgcctggaactggtgttcaacggcatcaat
tacgccggcgagatctgggtcaacggcgtgcaggtggggcatacgcgtggcgcattcgca
cgtgggcggttcgatgtcagcagctacctcacgcccggccgcaatgcgattgccgtgcgt
gtttcgccgccgccgcatccgggcattgcgcacgagcagtcgatgaccgccggcgttggc
gagaacggtggcatgcaggcactggatgggcccaccttcattgccagcgaaggctgggac
tggatcccggccgtgcgcgaccgcaatgccgggctctggcaggacgtacagctgcatgcc
accggcccgcttgcggtgggcgacacgcacgtggtcaccgccaaactggcgcccgaccat
cgccgcgccgagctggaaattgccgtgccattgcgcaacaccagcagcgctgcggtgcag
ggcacagtgcagcttgccttcggtgatgtgcgtatccagcgtgaggtcaacgtgcctgcg
ggcggcaccacgctcacgctcactgctgccgacacgccggagctggtggtgaccaatcca
cgcctgtggtggcccaacgggtatggcgagccctcgctgtacaccttgcaggtcggtgtc
gcagcgggcggtgtgcagtcggatctgcagcaactgcggttcggtattcgcgaggtcact
tacgagctgtcgttgttcgacgaacgcggcgcactgcgtcgtgtgctggtggatctcaat
caggcccggcagcgtggcgagcgcatcgtcgatgtgcggcacgccgccattcgcccggtg
cctggtggcaatgcgcaatcgctgtatcccggcgcactcgcgtcgccagcggtgacgcag
ctggatgacagtacgttggccccgcatctggtgctgcgcatcaacggtgtgcggattgcg
gtcaaggggggtaattggggcatggacgattggcgcaagcgcgtctcacgcgagcgcctg
gagccgtacttccgcctgcagcgcgatgcgcacttcaacgtggtgcgcaattgggtgggg
cagaacaccgaagcgagcttcttcgacctggccgacgaatacggcatgttggtgttgaac
gacttctggcaatccacgcagaactacaacatggagccggccgacgcggcgctgttcctg
gccaatgccgccgaggtcatcacgcgctttcgcaaccatccttcaattgtgctgtggttc
ggccgcaacgaaggcgttcccgcgccgatcctcaacgagggcctggacgcgctggtcgcc
gcgctcgatggcacacgctggtacaccggcagttccaacgaagtgaatctgcaaggcagc
ggcccgtacaactatcgcgagccggtggcgtacttcaacaagctggcacagggcttctcg
gtggaagtgggtacaccgtcgttctccaccctggagtccttcaaggcgtcggtacctgcg
gtgcaggatcaatggccgatcagtgacagctgggcgtatcacgactggcatcagtccggc
aacggcgataccgccagcttcatgcgctcactcagcgacaagcttggcgcaccaaccagt
ctggacgatttcgaacgcaaggcgcagctgctcaattacgaaacccaccgcgccatcttc
gaagggttcaacgcgcagttgtggacgaagaacagcggccggctgctgtggatgagccac
ccggcgtggcccagcaacatgtggcagatctacagccacgattacgacacccacgccgcg
tactacggcgtgcgcaatgccgccgagccgctgcacgtgcagatgaatctgcccggccac
gaagtcgtggtggtcaacaacacgactacagccgtgcgcggcctgcgtgtgcgtgcggag
acctatgcggccgacggccgcctactgcaacagcgcgagcaggcggtggatgcaacagcg
gtggcggtgtctgcacccgtgctgcagctggcgccattgcttgcggacgcaaaggaactg
ggctttgtgcggctgcagttgctggagcacgacggcacggtgcgctcgcgtaatttctac
tgggtggcgcgcgacgccgctgccatgcgcggcttggacgcattggcgccggtgccactg
gagctcaccacgcagctgcaggcaggtggtgcgccggtgttgagcgccactgtgcggaat
ccctcgcagcacgtggccctgggcgccaagctcaccttggtggatgcgcaaggccagcgc
atcttgccggcctactacagcgacaactatctcaatcttgcgcctggcgagagccgcacc
gtggaaattcgcgggccggccgaagccagcttgcgcgccgcgcgcgtgcagttgcgcggg
tggaatcttgcaccgtcttcgggcaccgccagcggcagtccctag
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