Xanthomonas campestris pv. raphani: XCR_3715
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Entry
XCR_3715 CDS
T01872
Name
(GenBank) rhamnogalacturonase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xcp
Xanthomonas campestris pv. raphani
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
XCR_3715
Enzymes [BR:
xcp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
XCR_3715
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
AEL08575
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Position
3966861..3968462
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AA seq
533 aa
AA seq
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MHRIPLRTLACALVLYAGVVAPAFAAFGITRSGDRIVVDTGAELLFSVNASNGDLVSMRY
RGNELQTTESKGSHIASGLGTASVEARVVGGAIVVTAKAGDLTQYYIARKGRNAIYMATS
APSLLPVGELRFIARLNVAKLPNALQEPDSSVGTAIEGEDVFLLPDGRTSSKFYSARRMF
EDPLHGVSGNGVAVFMLMGNRERSAGGPFFKDIATQKTRVTHELYNYMYSDHTQTEAFRG
GLHGVYGLLFTDGGAPSSAQTSTDFIDASLGVSGYLAADGRGTLAGRVSGVLAGQPAVVG
LRNAQAQYWATATGSGDYQINGVRPGRYRMTLYQHELEVAQRDVEVFAGATAQAALQAVS
LPGAVKWQIGVPDGTPGGFQYADLLPRAHPSDARMRWAPVTYTVGSSSVGSFPAVQWRGI
NTPTQIVFSLSSSEVRSYRLRIFVPLAQVSARPQIAVNARWNGPVPAAPNQPKTRGITRG
TTRGNNTLYEVDIPATALQAGSNRIAISLASGSPDNGFLSPAIVYDSVQLVAP
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcatcccgctgcgcacgctggcctgtgcgcttgtgctctacgccggcgtcgtc
gcgcccgcattcgccgccttcggcatcacccgcagtggcgatcgcatcgtggtggatacc
ggcgccgagctgctgttttcggtcaatgccagcaacggcgatctcgtgtcgatgcgctac
cgcggcaacgaactgcagaccaccgaatccaagggctcgcatatcgcctccgggctaggc
accgccagcgtggaggcacgcgtggtgggcggcgccatcgtggtcacggccaaggccggc
gacctcacccagtactacatcgcgcgcaagggccgtaatgccatctacatggccacctcg
gcgcccagcctgctgccggtgggcgagctgcgcttcatcgcccgcttgaacgtggccaag
ctgccgaacgcgttgcaggagccggattccagcgtcggcactgcgattgaaggcgaagac
gtgttcctgctgccggacgggcggaccagctccaagttctactcggcccggcgcatgttc
gaagacccgctgcatggcgtgagtggaaatggcgtggcggtgttcatgctgatgggcaat
cgcgagcgcagtgcgggcgggccgttcttcaaggacatcgccacacagaaaacccgcgtc
acccatgagttgtacaactacatgtattcggaccacacccagaccgaagccttccgcggc
ggattgcacggcgtgtacggcctgttgttcaccgacggcggtgcgccctcctccgcacag
accagcaccgacttcatcgatgccagcctgggcgtgagcggctacctggcagcggacggg
cgcggcacgcttgccgggcgcgtgagcggggtgttggccgggcagccggcagtggtcggc
ttgcgcaacgctcaggcgcaatactgggccaccgccactggcagcggcgactaccagatc
aacggcgtgcgcccgggccgctaccgcatgacgctctatcaacacgagctggaggtggcg
caacgcgatgtcgaggtgtttgccggcgccaccgcacaggccgcgctgcaggcggtgagc
ttgcccggcgcggtgaagtggcagatcggcgttcccgatggcacgccaggcggcttccag
tacgcagacctgctgccgcgcgcgcatccgtccgatgcgcgcatgcgctgggcaccggtc
acctacacggtgggatcaagcagcgtgggcagctttccggcggtgcagtggcgcgggatc
aacacacccacacagatcgtgtttagcttgagcagcagcgaagtgcgcagctatcggctg
cgcatcttcgtgccgttggcgcaggtcagcgcgcgcccgcagatcgccgtcaacgcacgc
tggaacggccccgtccccgctgcaccgaatcaacccaagacgcgcggcattacccgtggc
accacgcgcggcaacaacacgctgtacgaggtggatataccggcgacggcgctgcaggcc
ggcagtaaccggatcgccatcagcctggcctcggggtcgccggacaatggcttcctcagc
ccggccatcgtctacgacagcgtgcagctggtcgcaccgtaa
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