Xanthomonas campestris pv. raphani: XCR_4148
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Entry
XCR_4148 CDS
T01872
Symbol
pcaH
Name
(GenBank) protocatechuate 3,4-dioxygenase, beta subunit
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
xcp
Xanthomonas campestris pv. raphani
Pathway
xcp00362
Benzoate degradation
xcp01100
Metabolic pathways
xcp01120
Microbial metabolism in diverse environments
xcp01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
xcp00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
XCR_4148 (pcaH)
00624 Polycyclic aromatic hydrocarbon degradation
XCR_4148 (pcaH)
Enzymes [BR:
xcp01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
XCR_4148 (pcaH)
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Motif
Pfam:
Dioxygenase_C
PCDO_beta_N
CarboxypepD_reg
NQRA_SLBB
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
AEL09005
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Position
complement(4451173..4451904)
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AA seq
243 aa
AA seq
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MHDLPPDTPPGDVLLGYRRPRAGTQPAYLHAPYASTALRAPTRAPIAMPVTLSEVTGPRL
SQITLGAHAADLTAGFAGEPLGERIIVSGRVLDENGAPVRNSVVEVWQCNAAGRYQHEGD
RHDAPLDPNFRGTGQVLTDAHGRYAFKTIKPGAYPWRNHYNAWRPAHIHFSLHGDGIGQR
LITQMYFPGDPLLAHDPIYNCVDDPLARDRMVSSFDWEHAVSEYALAYRFDIVLRGRKQT
VWE
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaccttccccctgatacgccgcccggcgatgtcctgctcggctatcggcgcccc
cgcgccggcacgcagcctgcctatctgcatgcgccgtatgcgtccaccgcgttgcgcgcg
cccacacgtgcaccgatcgccatgccggtcacgctgtccgaagtcaccgggccacggctt
tcgcagatcaccctgggcgcgcatgcggccgacctcaccgccggctttgccggtgagcca
ctgggcgagcgcattatcgtgtccggccgtgtgctcgacgaaaacggcgcgccggtccgc
aatagcgtggtggaggtctggcaatgcaatgcggccgggcgctaccagcacgagggcgac
cgccacgatgcgccgctggaccccaactttcgcggcaccggccaggtgctgaccgatgcg
cacgggcgctacgccttcaagaccatcaagcccggcgcctatccgtggcgcaatcactac
aacgcctggcggccggcgcatatccatttttcgctacacggcgatggcatcggccaacgc
ctgatcacgcagatgtatttccccggtgatccgttgctcgcgcacgacccgatctacaac
tgcgtggacgacccgctggcacgcgaccgcatggtgtccagtttcgattgggagcacgcg
gtgagcgaatacgcgctggcctatcggttcgacatcgtgctgcgcggccgcaagcaaacc
gtctgggagtga
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