Xanthomonas citri pv. citri MN11: J163_03132
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Entry
J163_03132 CDS
T03780
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
xcr
Xanthomonas citri pv. citri MN11
Pathway
xcr02020
Two-component system
xcr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xcr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
J163_03132
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J163_03132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcr03021
]
J163_03132
Transcription machinery [BR:
xcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J163_03132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_38
HTH_IclR
HTH_AsnC-type
Sigma70_r4
HTH_23
Sigma70_r4_2
HTH_11
MarR
Motif
Other DBs
NCBI-ProteinID:
AJZ00823
LinkDB
All DBs
Position
3449563..3450960
Genome browser
AA seq
465 aa
AA seq
DB search
MTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDIAVESAPSASTEEPQ
REEVAPAERDDDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPL
SPRDRQIGAMLIDALDEDGYLREPLSAILETLALGAAVDEADVLTVLHQIQRFDPVGVGA
RTLGECLALQLGVLDADTPGRELALQIVAGPLERLPRAGVAGLAHELKRSTADVEQAVQL
VRSLDPRPGKQIGDLSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYENLIRSCG
ESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLEHQAGFLEFGAQALRPLTLREIAG
ELGLHESTISRAIARKYVRTPRGTIALRAFFASGIDTDSGGEASSTAIQAMIRRLIDAEN
PRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgcagttgcgtcaggcgatcaagctattgcagatgtccaccaccgagctggaa
gtggaaatcgccgaggccgtggaaaccaatccgctgctggaatgggccgacgaagccgcg
catgccgccagcgacatcgcggtggaatccgccccgtccgcgtccaccgaagaaccccag
cgcgaagaagtcgcgcctgccgagcgcgacgacgattggtcgcaggacgagctgcagtgg
accggctcgggcagcggcggcagcttcgacgacgacgagtccggcgatgccgcagagcgc
gtggccgaatccgaaacattggccgaccacctcttgtggcagttgcatctgtcgccgctg
tcgccgcgcgaccgccagatcggcgcgatgctgatcgacgccctcgacgaagacggctac
ctgcgcgaaccactgtcggccattctcgaaaccctcgcgctgggcgcagcggtcgacgag
gccgacgtgctcaccgtcctgcatcagatccagcgcttcgacccggtgggcgtgggcgcg
cgcacgctgggcgaatgcctggcactgcagctgggggtgctcgatgcggacacgcctggc
cgcgagctggcgctgcagatcgttgccggcccgctggaacggctgccgcgcgccggcgtg
gccgggctggcgcacgagctcaagcgctccactgccgatgtcgaacaggcggtgcagctg
gtgcgctcgctggacccgcgcccgggtaaacagatcggcgacctgtcgcaggacacctac
gttgttcccgactgcgtgatctggcgccagcgcggggtctggcgggctgcgctggccggc
cgcgcgcagcccaaggtcaccattcaccgcggctacgaaaacctgatccgcagctgcggc
gaatccgatgccggctatctgcgcggccagttgcaggaggcgcgctggctgctcaagagc
ctggaggcgcgtggcgaaaccctgctgcgggtggtgcgctgcctgctggaacatcaggcc
gggttcctggagttcggtgcgcaggccttgcgcccgttgacgctgcgcgagatcgcaggc
gagctcggcctgcacgagtccaccatttcccgcgcaatcgcccgcaagtacgtgcgcacc
ccgcgcggcaccattgcgctgcgcgcgttcttcgcctccggcatcgacaccgacagcggc
ggcgaggcctccagcactgccatccaggccatgatccggcgcctgatcgatgcggaaaac
ccgcgcaagccgctttccgacgccaagctggccgatctgctgaaaacatccggcgtccca
gtggcgcggcgcaccgttgcgaagtatcgtgaggccatgaacatttccgcctcccacgaa
cgcgtgcgcatcgcctga
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