Xanthomonas citri pv. citri MN11: J163_03281
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Entry
J163_03281 CDS
T03780
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xcr
Xanthomonas citri pv. citri MN11
Pathway
xcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J163_03281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcr03019
]
J163_03281
03400 DNA repair and recombination proteins [BR:
xcr03400
]
J163_03281
Enzymes [BR:
xcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J163_03281
Messenger RNA biogenesis [BR:
xcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J163_03281
DNA repair and recombination proteins [BR:
xcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J163_03281
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJZ00971
UniProt:
A0A0U5FGP1
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All DBs
Position
3652369..3654165
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AA seq
598 aa
AA seq
DB search
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHVPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLGHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRERSAQRTGLPVQPQDLALFNALRGLRAD
LAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccccgcccacgaactgctcagccgcgtctttggctacgacgacttccgcggc
ccgcagcaggccattgtcgaacacgtcgctgccggcaacgatgccctggtcctcatgccc
accggtggcggcaaatcgctgtgctaccaggtgccggcgctgctacgcgacggcatcggc
atcgtggtctcgccgctgatcgcgctgatgcaggatcaggtcgaggccctgcgccagctc
ggcgtgcgcgccgagttcctcaattccaccctggatgcagaaaacgcccagcgcgtggaa
cgcgccctgctgtccggcgacctggatctgctctacgttgcgccggagcgcctgctgacc
cagcgcttcctttcattgctggaacgtagccgcattgcgctattcgccatcgacgaagcg
cattgcgtctcgcaatggggccacgatttccgcccggaataccgccagctcaccgtactg
catgagcgctggccgcatgtaccgcgcatggcgttgacggccaccgccgacccgccgacc
cagcgcgagatcgcagagcgcctggatctggtagacgcgcgccacttcgtcagttccttc
gaccgccccaacatccgctacacggtggtgcagaaggacaatgcgcgcaaacagctgcag
gaattcctgggccgtcatcgtggctcggccggcatcgtctatgcgatgtcgcggcgcaag
gtggaagaaaccgcgcagcaactgtgcgcgcaaggcttcaatgcactgccctatcacgcc
ggcctgccggcagaggtacgcgcagaaaaccagcgccgcttcctgcgcgaggacggcatc
atcatggccgccacgatcgctttcggcatgggcatcgacaagccggacgtgcgcttcgtg
gcgcacgtggatctgcccaaatcgcttgagggctactaccaggaaaccggacgcgccggc
cgcgacggcgatcccgccgaggcctggctgtgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgagcagggcgaagcggccgaagagcgcaagcgtctggagcgcgccaag
ctcgaccacctgctgggctattgcgaatcgatgcaatgccgtcgccaggtgctgctggcc
ggcttcggcgagacctatcccaaaccctgcggcaactgcgacaactgcctgaccccggcc
gccgcctgggacgccacggtggcctcgcagaaggcgctcagttgcgtctaccgcagcggg
cagcgctttggcgtgggtcatctgatcgacatcctgcgcggtagcgaaaacgagcgtatc
aaacagctggggcacgaccagctcagcacctacggtatcggccgcgatctggacgaacgc
acctggcgcggcgtgtttcgccaactggtggccgccagcctgctggaagtcgatagcgaa
ggtcacggcggcctacgcctcaccgatgccagccgccaggtgctcaagggcgagcgccag
gtcatgatgcgccgcgaaaacccggctgccgggcgcgagcgtagcgcgcagcgcaccggc
ctgccggtgcagccgcaggatctggcgctgttcaatgccttgcgcggcttgcgcgcggat
ctggccaaggaacagaacgtgccggccttcgtgatcttccatgacagcaccttgcgcaac
atcgccgaacaacggccaaccagcatcgatgcgctctcgcgggtgggcggcatcggcggc
ggcaagctggcgcgctacggcgcgcaattgatcgagatcgtgcgcgaacagggctga
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