Xanthomonas citri pv. citri MN11: J163_04470
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Entry
J163_04470 CDS
T03780
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xcr
Xanthomonas citri pv. citri MN11
Pathway
xcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J163_04470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcr03400
]
J163_04470
Enzymes [BR:
xcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J163_04470
DNA repair and recombination proteins [BR:
xcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J163_04470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJZ02139
UniProt:
A0A7U2M7R2
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All DBs
Position
complement(5074124..5077855)
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AA seq
1243 aa
AA seq
DB search
MSISPVTDPYLQLPLHGVRLIEASAGTGKTFTLATLFTRLVVERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAASLVPDAPPPFVGAALAAGDLADDPSRPGPLLHATPDVLLTGAIL
ATHLAGASETPAALRRRLQQAVEEIDLAAVFTIHGFCARVLREHALESGQAFAAPELLAN
DRELLGEVAADLWRQRAADAVMAEDLIALWSGGPEALASDLRALVRHPQLLPRPSTPAPD
PTPIRQAAAQALVATLRAHGDTAYDAIASAFDNKVFDGRRARRASFDKAFEELWNGTADA
HWILDEKAHLDKLLPARMREFCRDGAHDRVPCSPLFDALQVWRQADIQVQQWQQNRRIAL
LHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADALLKRLRTQYAIALVDEFQ
DTDDRQWSIFSNVFGEGPLAQAAGLEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAERA
PPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAGTKRVDEDLQRDGVTAPA
LTLWRAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAGGRDGTATVCGRPVQAGD
IAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATEEALELLALLQALLDPGDDSRLRA
ALATVLIGEDAIAIAALERDGERHRRWQQQALDWRERWQRGGPLALIGDLGATHGQRLLA
LVDGERRLTNYLQLAELLQEADARALGPHGLVDWLSRRIANADDNDDAQQLRLESDARRV
QIVTLHKSKGLEYPLVFLPYVGIGRKPPDQKPGKRVIVYRDGKRCLHWPDDVDSMEWKAI
KEEWKKEQDAEDARLLYVGLTRAEHALWIASGPFHQHERTALSAMLRALDALQGTAGEGG
VVVDTTTPPAHLPRLPAPSEAQVPLARNPQRHIAPEWWVYSFTQLANADAGAATDPMASA
TVVGSGGSDEPSGSEAVAVAVATDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQ
TAPDGQAAPILEALQRGGYAQDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNE
MEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYSVDGRWYVLDY
KSNRLPSYDADALARAMAHSEYELQALIYTVALHRWLRFRLGDAYDYARDFGGVRYLFCR
GLDAARPAVEGMPAPGIHAWRFAPALVQSLDALFAGAPPEALA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcagccccgtcaccgacccgtatctgcagttgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagacctttacgctagcgacgctgttcacgcggctg
gtggtcgagcgcggcttgcgcatcggccagatcctggcggtgaccttcaccgaagccgcc
acgcaggagctgcgccgccgcatccgcgaacgcctggtgctggccgcaagcctggtcccc
gatgcgccaccgcctttcgtaggagcggccctggccgcgggcgaccttgccgacgacccg
tcgcggccaggtccgctcctacacgcaacacccgacgtgctgctcaccggcgccatcctc
gccacgcatctggccggcgccagcgaaacgcccgccgccttgcgtcgccgcctgcagcag
gcggtggaagaaatcgatctggctgcggtgttcaccatccacggtttttgcgcgcgcgtg
ctgcgcgaacacgcgctggaaagcggccaggcgttcgctgcgccggaattgctcgccaac
gatcgcgaattgctcggcgaagtcgcggccgatctgtggcggcagcgcgccgccgatgcg
gtgatggccgaagatctcatcgccctgtggtcgggcggccccgaggccttggccagcgat
ctgcgcgcgctggtgcggcacccgcagttgctaccaaggccttcaacgccagcacctgat
ccaacaccaatccgccaagctgccgcgcaagccttggtcgctaccctgcgcgcgcacggc
gacacggcttacgacgccatcgcctccgcattcgacaacaaggtcttcgatggtcgccgt
gcgcgccgtgcaagttttgacaaggcttttgaagagttgtggaacggtactgccgatgct
cactggatactggacgagaaggcacatctagacaaattgctgcctgcacgcatgcgcgaa
ttttgcagggatggggcgcacgatcgcgtaccgtgctcacccttgttcgatgcgttacaa
gtgtggcgacaagctgacatacaggtacaacaatggcagcaaaaccgccgtatcgcgttg
ctgcatgcgctacgcgacgatgccatcgcacggctggcgctgctcaagcggcaacgccgc
gtgcagacctacgacgacctcgtcgatggtgtcgcgcacgcattgcagggcgcacaggcc
gacgccctgctcaaacgcctgcgcacgcaatacgccatcgcgctggtggacgaattccag
gacaccgacgaccgccagtggtcgatcttttccaacgtgttcggcgaaggcccgctcgca
caagccgccggactggaaccggcgctgtttctgatcggcgaccccaagcaggccatctac
ggcttccgtggcggcgatgtgcgcacctatctggccgcggcagtcaccgccgaacgggcg
ccgccgctgagccacaacttccgctcgcgccccggcgtgctggcggccatcgacgcgctg
tacgcgcaggccggctacgccgatgccttcctcaccgacggcatcgccttccacccggtg
cgggctgggaccaagcgcgtcgatgaagacctgcaacgcgatggcgtcactgcgccggca
ctgacgctgtggcgggcgccggaaccgccgccgcctgcgaaaggcaagcccaagccctgg
agcgccggccgcgcgcgcgagctggcgaccgccgcgtgcgttgcagcgatccgcggctgg
ttggccggtggccgcgacggcacggccacggtgtgcggtcgcccggtgcaggccggcgat
atcgccgtgctggtgcgcagccacggcgaggccacgcgcatccagcaggcgctcggcgcg
gtgggcatcccggcggtggccgccggcaagcaaagcctgttcgccacggaagaggcgctg
gaattgcttgccttgctgcaggccttgctcgacccgggcgacgacagccgcctgcgcgcc
gccttggccacggtcttgatcggcgaagacgccatcgccatcgccgcacttgaacgcgac
ggcgagcgtcaccgccgctggcagcaacaggcgctggactggcgcgaacgctggcagcgc
ggcggcccgctcgccctgatcggcgacctcggcgccacccacgggcaacgcctgctcgca
ttggtcgatggcgaacgccgcctcaccaactatctgcaactggccgaactgctgcaggaa
gccgatgcgcgcgcactcggcccgcatggcctggtcgactggctgtcgcggcgcatcgcc
aatgccgacgacaacgacgacgcccagcagctgcggctggaatcggatgcgcgccgcgtg
cagatcgtcaccctgcacaagagcaagggcctggaatatccgctggtgttcctgccgtat
gtcggcatcggccgcaagccaccggaccagaagcctggcaagcgtgtgattgtttatcgg
gatggcaaacgctgtttgcattggcctgatgacgttgactccatggaatggaaagcgatc
aaagaggaatggaagaaggagcaggatgccgaagacgcgcgcctgctctatgtcggcctc
acccgcgccgagcacgcgttgtggatcgccagcggcccgttccaccagcacgaacgcacc
gcattgtcggccatgctgcgtgcgctcgatgcgctgcagggcacggcgggcgagggcggc
gtggtggtggacaccaccacgccgccggcccacctgccgcggctgccggctccgagcgag
gcgcaggtgccgctcgcgcgtaatccgcagcgtcacatcgcacccgagtggtgggtgtat
agctttacccaactggccaacgccgatgccggcgcggccaccgacccgatggccagcgcc
accgtcgtcggcagcggcggcagcgatgaaccgtccggcagcgaggcggttgccgtggcc
gttgccaccgacgccgagccgttcgatccgcgctttgccggcaaccgcttcggcgtggtg
atgcacgacgtgttcgaacgttgcgacttcgccgcctggcaggcctggcggccgggccaa
accgcgcccgacggccaggccgcacccatcctggaggccctgcaacgcggcggttacgcc
caggacgacctcgacgacggcctgcgcatgctcaccgcgctgatcggccacacgctcacc
gtcgcattgcccgaaggcacccgcctggccgacgtgcccgaaccgcagcgccgcaacgag
atggaattccatttcgccatgcggcccacccgcgtcgatgcgttgctcgccttgctgcat
cggtttggcgtggtcggcgaccgccaggccttcggcgcgcgccagcgcctggaaggcctg
atgaccggcctgatcgacctcacctacagcgtggacgggcgctggtatgtgctggactac
aaatccaaccgcctgcccagctacgacgccgacgccctggcgcgggccatggcgcacagc
gagtacgaactgcaggcgctgatctacaccgtggccctgcaccgctggctgcgcttccgc
ctgggcgacgcctacgactacgcccgtgacttcggcggcgtgcgctatctgttctgtcgc
ggcctggatgcggcacgccccgcggtcgagggcatgccggcgcccggcatccacgcctgg
cgcttcgcaccggcgctggtgcagtcactggatgcgctcttcgccggcgcgccgcccgag
gcactcgcatga
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