Xanthomonas cerealis: KHA79_10880
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Entry
KHA79_10880 CDS
T10673
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcs Xanthomonas cerealis
Pathway
xcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHA79_10880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcs03019
]
KHA79_10880
03009 Ribosome biogenesis [BR:
xcs03009
]
KHA79_10880
Enzymes [BR:
xcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KHA79_10880
Messenger RNA biogenesis [BR:
xcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KHA79_10880
Ribosome biogenesis [BR:
xcs03009
]
Prokaryotic type
rRNA processing factors
KHA79_10880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UKE45698
LinkDB
All DBs
Position
2475245..2478766
Genome browser
AA seq
1173 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EAPEAVAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGESPAPAPTANEPAQRQRAHDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNVRRDERRPGNGGGNAQGSQQNLASKPPR
NEQAPQQAKPQQNPPQQPKAPKQQPQNPPRQPRPQQDPAQAALQSDKPQRQPRQDESAAK
QVTAPAAVQDATTIAAAAVAGGAAALSSDAPASEATSAAPAAAAAQPNLAQPSVDERESA
AETAQAVPAGENGDGDDANGEAGGRRRRGRRGGRRRRRGSGEAGSGSEGAAFDDNDLDAG
DSDSDGDTAPAPSRSQPEFDFDDDAAPAEATETKPQQALRAPQEKREPRPPRTPRHERAA
AKQTPVAAAPSVTDAGTDPTATQAAPVAAAAVAAIATAPAVAESAPASAPVAAAPAQAAT
PVVAAPLPPASDVHAAQVAAAPAAEHAPSFVVESAPSEPAPATIEAAPQATATPIIERPA
PIAAATPAAETAVAPAAAAEEPATPSQLVAEPRQAAAATPQPIAEEAAPSTPAYVPVQTT
LLDAFHEAPVAATEPKRHAPVAAAAPVSNDDIERSQASTAEPAPTAAAASTGLFDAPPAA
PADAPIAVAQHQPHAKSGEGKSDDDKEHKERAS
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacgcgactcgaaccctcgctcgaagcggccttcgtcgaatac
ggcggcgagcgccatggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgagaactgctgcgcgagggtcaggaagtggtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggcagcgctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgacacccccgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccctccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtc
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggccgccgaagaagtggcgcgccagctgcgcctgcgcgacctcggcggtctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtctgcccgcgctgcgacggccacggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gaaaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcagctgcacaccccgcac
tacgaggtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctat
cagcgcaacaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaatatc
ccggcgccggcggtgaccaacgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gaggcgcccgaagcggtcgccgcgcccgtgcaggtccaggcgccggcccccgccccggtc
gcggcccccgccaccggcgtagtcggctggctgaagcggatcttcggtgccggtgaaagc
ccggccccggcgccgaccgcgaacgaaccggcgcagcgccagcgcgcccacgacggcaac
cgcaaccgcaacgaccgcggcgaccgcaacgcgcgacgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcacgcggcaacggcggcaacgtgcgccgcgacgagcgtcgtccg
ggcaacggcggcggcaacgcgcagggaagccagcagaacctcgcatccaagccgccgcgc
aacgaacaggcgccgcagcaggccaagccgcagcagaacccgccgcagcagccgaaggcg
ccgaagcagcagccgcagaatccgccgcgccaacccaggccgcagcaggacccggcgcag
gccgccctgcagagcgacaagccgcagcgccagccgcgtcaggacgagagcgctgccaag
caggtcaccgcacctgccgcggtgcaggatgccaccacgatcgcggctgctgccgtggcc
ggtggtgccgccgcgttgagcagcgatgcaccggccagcgaggccaccagcgccgcgccg
gcagcggccgcagcgcagccgaacctggcgcagccgagcgtcgatgaacgcgagagcgca
gcggaaaccgcgcaggccgtcccggctggcgagaacggcgatggcgacgacgccaatggc
gaggccggtggccgccgccgtcgcggccgtcgtggcggccgtcgccgtcgtcgcggcagt
ggcgaagcgggcagcggcagcgagggtgcagcgttcgacgacaacgacctggatgccggc
gacagcgacagcgacggcgacaccgcgccggcgccgagccgcagccagccggagttcgat
ttcgacgacgatgccgcccccgccgaagccactgagaccaagccgcagcaagcgctgcgt
gccccgcaggagaagcgcgagccgcggccgccacgtacgccgcgtcatgagcgggcggct
gccaagcagacgcctgtcgctgctgcgccgtcagtcactgacgccggaaccgaccctacc
gcaacccaggctgcgccggttgctgcagccgctgtggccgcgatcgcaacggctcctgcc
gttgctgagtcggcaccggcatcggcacccgtcgcggcagcgcctgcgcaagcagcgacg
ccggtagtggcagcgcccttgccgccggccagcgatgtacatgccgcacaggtcgcggca
gcgcccgcagcggaacatgccccttcgttcgtcgtcgaatcggcaccttccgagccagcg
ccggcgacaatcgaggccgcgccgcaagcgaccgcgacgccgatcatcgaacggcctgct
ccgatcgccgcagcgacaccagcggcggaaacggcagtggcaccggccgcagcagccgaa
gaacctgcaacgccgtcccaactggttgccgagccgcggcaagcagccgctgcgacgccg
caaccgatcgcggaggaagcagcgcccagcacgccggcctacgtgccggtgcagaccacg
ctgctggacgcctttcacgaggcgccggtcgccgcgaccgaaccgaagcggcacgcgccg
gtcgccgcggccgccccggtgtcgaacgacgacatcgagcggagccaagccagcactgcc
gaaccggcacctaccgctgcggcggccagcaccggcctgttcgatgcgccgcctgcagct
ccggcggatgcgccgatcgctgtcgcccagcaccagccgcatgcaaagtccggcgaaggc
aagagcgacgacgacaaggaacacaaggaacgtgccagctga
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