Xanthomonas cerealis: KHA79_16825
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Entry
KHA79_16825 CDS
T10673
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xcs Xanthomonas cerealis
Pathway
xcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHA79_16825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcs03019
]
KHA79_16825
Enzymes [BR:
xcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHA79_16825
Messenger RNA biogenesis [BR:
xcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHA79_16825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UKE46714
LinkDB
All DBs
Position
3854554..3855915
Genome browser
AA seq
453 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLL
QHLGTSPQPVGNGARKPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGTRKRELLLH
LLAADSRMQTLVFARTKHGADKLTMFLDKSGLKTAAIHGNKSQGQRLRALSDFKAGRITV
LVATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLR
AISRMLKREMDIRDVPGFEPSTPIRWGNNNPADERPGGQRPPRKSTHVRRPHGDAPRAHA
HAGAKPAGGTQPGGARRQGERRRSGGGQPSAAR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggcctggcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccaccccgatccagttgcaggcgattccgctggcgctggcaggccacgac
ctgatggccggcgcgcagaccggcaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggtacctcgccgcagccggtcggcaatggcgcacgcaagccgcgcgcgctg
atcctgaccccgacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagc
aagtacctgcgcatccccagcaccaccatctacggcggcgtcggcatgggcaaccagctc
gacgcgctgcgccgcggcgtggacctgctgatcgcctgcccgggccgcctgctcgatcac
ctcgagcgccgcagcgtggacctgtcgggcatcgagatcctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccttcgatcaagcgcatcctggccaagctgcccaag
cagaaccggcagaccctgctgttctcggcaacgttcgaggaaggcatcaagcagttggcc
cgcgagttcatgcacaacccgcaggaaatccaggccacgccgagcaacaccgtcgccgac
accatcacccaccgcgtgcacccggtcgatggcacgcgcaagcgcgaactgctgctgcac
ctgctggccgccgactcgcgcatgcagaccctggtgtttgcgcgcaccaagcacggcgcc
gacaagctgaccatgttcctggacaagtcagggctgaagaccgccgcgatccacggcaac
aagagccagggccagcgcctgcgcgcgctgagcgacttcaaggccggccgcatcacggtg
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgaaggtcatc
aactacgacctgccgatggtcgccgaggactacgtgcaccgcatcggccgcaccggccgc
aacggcgcgcagggcgaggcggtgtcgctggtggcgcaggacgaggccaagctgctgcgc
gcgatctcacgcatgctcaagcgtgagatggacatccgcgacgtgccgggcttcgagccg
tccacgccgatccgctggggcaacaacaatccggccgacgagcgtccgggcggccagcgt
ccgccgcgcaagagcacccatgtgcggcgtccgcacggcgacgcgccgcgcgcgcacgcg
catgccggggccaagccggccggcggcacccagccgggcggcgcacgccgccagggcgag
cgccgtcgcagcggcggcggccagcccagcgccgcgcgctaa
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