Xanthomonas citri subsp. citri A306: J151_00565
Help
Entry
J151_00565 CDS
T03584
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xct
Xanthomonas citri subsp. citri A306
Pathway
xct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J151_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xct03019
]
J151_00565
Enzymes [BR:
xct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J151_00565
Messenger RNA biogenesis [BR:
xct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J151_00565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_2
P-loop_SecA
DUF594
DUF4123
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJD67036
LinkDB
All DBs
Position
complement(527046..528338)
Genome browser
AA seq
430 aa
AA seq
DB search
MSFSDLSLSPQLQPFFDTALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYA
LPLLQQRCLAPDTAPRVLGALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSIN
PQLLALRGGADLVVATPGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILAL
LPAQRQTVLFSATFPPAIASLAKRRLRDPLRVTIDATPEQAPAIAQCAIAVDAGQRTQLL
RHLLQEHAWPQLLVFVASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADV
QVLVATDLAGRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ
WRLIEKRQGLRVPTSVIEGFEPTPVEAPASDNAPGTAMRAPNDNGGIKGKRPSKKDKLRA
AAQAQTGKPG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttccgatctctcgctgtcgccgcagctgcagccgttcttcgataccgcgctg
gccaaggccggtctgcgcacacccacgcccatccagcagcaggcgatcccgccgatgctg
gatgggcgcgatctgattgcgatggcgcaaaccggctcgggcaagaccctggcctatgcc
ctgccgctgctgcagcagcgctgcctggcgcccgacaccgccccgcgcgtgctcggcgcg
ctggtgctggtgcccacgcgcgaactcgccgcgcaggtggaggacgcgctgcgccagctg
gccgcgcatctgccgcgtcgcctgaagagcgtggtcgccaccggcggtagttcgatcaat
ccgcagctattggcgctacgcggtggcgccgacctcgtggtggccacgcccggccggttg
ctggatctagtcgagcacaacgcgctgcgcctgaacggggtgaccacgctggtgctggac
gaagccgaccgcctgctcgagctgggcttcggtgccgaactcgatcgcatcctggccttg
ctgccagcgcagcggcagaccgtgctgttttcagccacctttccgcccgccatcgcgtcg
ctggccaagcgtcgcctgcgcgacccgttgcgcgtcaccatcgacgccacgcccgaacag
gcaccggcgatcgcgcaatgcgcgattgcggtagatgccggccagcgcacgcagctgctg
cgtcatctgctgcaggaacacgcctggccgcagctgctggtgttcgtcgccagccgccac
agcgcagacaaggtggccgaaaaactgagcaagaccggcatcgccgccttgccgctgcac
ggcgaattgagccagggccgccgcgaacgcacgctgcgcgccttcaaacaagcggacgtg
caggtgctggtcgccaccgacctggccgggcgcggcatcgatatcgacgccttgccggcg
gtgctcaactacgatctgccccgctccactgtcgactacacccatcgtatcggccgcacc
gcacgcgccggtgccagcggcgtggcgatcagcttcgtcacggcagacagcgcccagcag
tggcggctgatcgaaaaacgccagggtctgcgcgtgccgaccagcgtgatcgaaggcttc
gagccgaccccggtcgaggcgcccgcctccgataatgcgcccggcacagcgatgcgtgca
ccgaatgacaacggcggcatcaagggcaagcggccgagcaagaaagacaaactgcgcgcc
gcggcgcaggcgcagactggcaagccgggctga
DBGET
integrated database retrieval system
