Xanthomonas euvesicatoria pv. vesicatoria: XCV0992
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Entry
XCV0992 CDS
T00288
Symbol
rpoC
Name
(GenBank) DNA directed RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcv
Xanthomonas euvesicatoria pv. vesicatoria
Pathway
xcv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XCV0992 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcv03021
]
XCV0992 (rpoC)
03400 DNA repair and recombination proteins [BR:
xcv03400
]
XCV0992 (rpoC)
Enzymes [BR:
xcv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XCV0992 (rpoC)
Transcription machinery [BR:
xcv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XCV0992 (rpoC)
DNA repair and recombination proteins [BR:
xcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XCV0992 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAJ22623
UniProt:
Q3BWZ0
LinkDB
All DBs
Position
1124666..1128880
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSEM
ETLSGKPAAAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atctttggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcacgctggccaaggtacgccgcgag
cgcatgggtcacatcgacctggcctcgccggtcgcacacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggcggtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgtctgaccaagcgc
atcaagctgatcgaggccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgttgccggtgctgccgccggacctgcgtccgctggtgccgctagatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgcctgctggagctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgttgcag
gaatcggtcgatgcgctgctggacaacggccgccgtggtcgtgccatcaccggtaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactattccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcatcagtgcggtctgccgaagaaaatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgattcgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgaaccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtactgccttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtcgaactgcacgccaaggtcaaggtgcgcatcacccaggtggatgtggaagccggc
ggcaagcgcagcagcggtacctcgatcgtggacaccacggtcggccgtgcgctgctgagc
gaaatcctgcctgaaggcctaccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctacgcctacgcaacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcgtaccagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgaaaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggtagccaggcgcagatccgtcagctg
gccggcatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagacggcgaactccggttacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaagggttg
atcatgaccccgatcgtggaaggcggcgacgtggtggagccgttgcgcgagcgcgtgctg
ggccgcgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtggccaagctcgaagacgccagcgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgctac
ggccgcgacctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggcgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctcaagtcggtggcgcatgccagcggttcgctggttgcggtctcgcgttct
ggcgaactgtccgtgctcgatggccatggccgcgaacgcgagcgttacaagctgccgtac
ggcgcgaccatcaccgccaaagacggcgatgcggtcaaggccgggcagagcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtgatcgagaagaccgacgagctgaccggtttggcgtcgcgt
gaaatcaccgacccgaagcgtcgcggtgcacaggccaaggaactgcgcccgatcgtgcgc
atcgtcgatgccaagggtaacgacctgacgattccgaacacggatctgccggcccagtac
ctgctgccgccgcgctccatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggtggccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgttgcggacttgttcgaagcacgcaagccgaaggatccggcgatcctggccgaacgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttcggaacacgaagagctgattcccaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtgaccaagggcgagaccgtggtggacggcgagccgagtccgcaagacatc
ctgcgcctgctgggtgtcgaaccgctggccgcatacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacgcgccagatg
ttgcgtaaggtcgagatcgttgaccagggcaacagcaagttcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccggcc
aagtacgatccggtgttgctgggtatcaccaaggcgtcgctggccaccgagtcgttcatc
tcggcggcatcgttccaggaaaccacccgcgtgctgaccgaggcggccgtccgcggtacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgatcccggccggt
acgggtctggcgtatcacgccggacgtcgcaaggcctcgggtctgaccgactcggagatg
gaaacgctgtcgggcaagccggcagccgccgaaccggtcgctgcagtggccgacgctggc
gcggacgaggagtaa
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integrated database retrieval system
