Xanthomonas campestris pv. vesicatoria: XCV2423
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Entry
XCV2423 CDS
T00288
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcv
Xanthomonas campestris pv. vesicatoria
Pathway
xcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCV2423 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcv03019
]
XCV2423 (rne)
03009 Ribosome biogenesis [BR:
xcv03009
]
XCV2423 (rne)
Enzymes [BR:
xcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XCV2423 (rne)
Messenger RNA biogenesis [BR:
xcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XCV2423 (rne)
Ribosome biogenesis [BR:
xcv03009
]
Prokaryotic type
rRNA processing factors
XCV2423 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAJ24100
UniProt:
Q3BSV9
LinkDB
All DBs
Position
complement(2747199..2750849)
Genome browser
AA seq
1216 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPAPVVTVPIPAPITGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRSNR
GERGERGGQRRDGRDARNGGNGGNQQRGNGGNGNGANKERRDERRQPASAQGAQNGAQAQ
QVQAPKPPRNETQASKQQQPQQQKSKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTA
AAQTVTSTAATATTSSVVAAIADAAAPTNAQTNANEAAQAHPVDVMVSESTADRGADANA
TAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGTSVDGLEGDDLDSDADND
LDGDSEGDDAGAHAHVSGAPRAGQPEFDFDDEAPAPAVRAKPESAAQATAKPRPVPKERA
EPRGGSDTASTTAPVSNTVPASQASAAPVAEAARERPAAPVAATDAPAKPAPAVTASTAA
STEGAAAQAAEQRPAPVAQQASATPAPLAAPAPVASTPAPAVAPAAGTAPTALAVASPVT
NDAATSSQHQPAPSAPASAAVPAADAEAAKADHQQRAVSADVAAPAVQAAPVQPARATPA
DDLPAPAAATPASQAAVVTVTSPHAEQSASQAPSAEVAMTSTSTVVQASPSADTAPVRKP
YAPVQTTMLDALSPNDAAPAASSASKPPADPAAEQELQAGKPKPTVVVSEPVKPVAPSAD
ADQVQDDDNNKPRGDH
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaagggccgtatcacccggctagagccttccctggaagcggcgttcgtggactat
ggcgccgagcgtcatggcttcctgccgttgaaggaaatttcccgcgattatttccaggcc
ggtgtcgaccataacaagtcgaccattcgcgagcttctgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cgcatcgagggcgaagaccgcgccgcgttgaaggaagcgctggacaagctcgacattccc
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactatctgctgcagacctggaaggcaattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgatgtcggcgagatcctggtcgatacgccggagctgtacgccgacgcccaa
gagttcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtg
gacgtgaactcctcgcgcgccaccaaggggagcgatatcgaagaaaccgcgttccagacc
aatctggaagcggcagaagaagtcgcacgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagttgggccgcatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctgcgaccgagcctgggcgaatccagccagatc
gtctgtccgcgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggcagaagagcacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggaaatcgccaactacctgctcaacgaaaagcgcagcgcactgcgtgaaatc
gagcagcgccacgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcactgaccaaggcgcagttgaatatt
cccgcagccccggcggtcacgtcgatcaagccgagccaaccggcaccggttcgcgaagaa
gcccctgccccggtcgcgcccgtcgctgcgccggcgccggtggtgaccgtgcccattccg
gcaccgatcaccggtgttgtgggctggctgaagcggatcttcggcggcgtcgagcccgtc
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcagtaaccgt
ggcgaacgcggcgagcgtggcggtcagcgccgcgatggtcgcgatgcccgtaatggcggc
aatggtggcaaccagcaacgtggcaatggcggcaatggcaacggcgccaataaggaacgc
cgtgacgagcgtcgccagcctgccagcgcccagggcgcgcagaatggcgcacaggcacag
caggtgcaggcgcctaagccgccgcgcaatgaaacgcaggcgtcaaagcagcagcaaccg
cagcagcagaagtccaagccgcagaaccagagcccacgcccgccacgtgcgcctgcacag
caggacggcgcgccagccgagcggcagccgcgtccggcacgccaggatgagggtacggca
gcggcgcagaccgtgacctccactgccgcaacggccaccacgtcgagcgtggtggccgcc
attgccgacgccgctgcacccaccaatgcgcagaccaacgccaatgaagcggcgcaggcg
catcctgtcgatgtcatggtgagcgaatccaccgctgatcgtggcgccgacgcaaatgca
actgcaccggcccaggatgccgcaggcgacgatgcagccaatggcgaaggcgggagccgt
cgccgccgcggccgtcgtggtggccgtcgtcgtcgtcgtggcgccggtgccaacggagaa
ggtggtaccagcgtcgatggcctggaaggcgacgatctggacagcgatgccgacaacgat
ctcgatggcgacagcgaaggcgacgacgccggtgctcatgcgcatgtatcgggcgcaccg
cgcgccggccagccggagttcgatttcgacgatgaggcaccggcaccggcggtgcgcgcc
aagccggaatccgctgcccaggcaaccgccaagccgcgtccggttcccaaggagcgcgca
gagccacggggcggcagtgacacagcttcgaccaccgcgccggtttccaataccgtgccg
gcatcgcaggcttcggcagcacccgttgccgaagccgcccgcgagcgccctgctgcgccc
gttgctgctaccgacgcaccagccaaacccgcgccggctgtcacagcgtcgacggctgcc
agcaccgagggtgctgcagcgcaggctgcagaacagcgccccgcgccggtcgcacagcag
gcgtccgctaccccggctccgcttgccgcccctgcgccagtggcatccacgccggcacct
gcagtggctcccgctgccgggactgcaccgacggcactggctgttgcatcgcctgtgacc
aacgatgcggcgacaagcagccagcaccaacctgcgccctcggcgccggcaagtgcggct
gtacctgccgccgacgccgaggccgcgaaggccgaccaccagcagcgcgctgtgtcggcg
gacgtggcagcgcctgcggtgcaggcagcgccggtgcagcctgcacgggcaacgcctgct
gacgacctaccggcaccagcggcggctacgccggcatcgcaggccgcagtggtcacggtg
acgtcgccgcacgccgagcagtctgcttcgcaggcgccatcggccgaggtggcaatgacc
tcgacctcgacggttgtgcaggcaagcccaagtgcagacaccgcgcccgtgcgcaagccg
tatgctccggtgcagaccaccatgctcgatgcgctgagcccgaacgatgctgcgccagca
gcctcctcggccagcaagcctccggcagaccctgcagcagagcaggagttgcaggcaggc
aaacccaagccgacggtggtcgtgtccgaaccagtcaagccggttgctccatcggccgac
gccgaccaggtgcaggatgacgacaacaacaagccgcgtggcgatcactga
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