Xanthomonas euvesicatoria pv. vesicatoria: XCV3954
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Entry
XCV3954 CDS
T00288
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xcv
Xanthomonas euvesicatoria pv. vesicatoria
Pathway
xcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCV3954 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcv03019
]
XCV3954 (rhlB)
Enzymes [BR:
xcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCV3954 (rhlB)
Messenger RNA biogenesis [BR:
xcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCV3954 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAJ25685
UniProt:
Q3BNH8
LinkDB
All DBs
Position
complement(4537342..4539063)
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AA seq
573 aa
AA seq
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MSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFRE
AREQRAAEEQRRGGGRSGSGGSRSGSGGGGGRREGAGADGKPRPRRKPRVEGQAPATAAS
TEHPVVAAAAGQAPSAGVADAERAPRKRRRRRNGRPVEGAEPAVASTPVPAPAAPRKPTQ
VVAKPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgaccttttcctcgttcgatctgcatccggccttg
atcgccgggctggagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttg
ccggtcgcgctgccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagacc
ttggcgttcctggtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgc
aagccggaagacccgcgcgcgctgatcctggcgccgacccgcgagctggcgatccagatc
cacaaggacgcagtgaagttcggcgccgaccttggcctgcgctttgcgctggtctatggc
ggggtggattacgacaaacagcgcgaactgttgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgc
gagatctgcgtgctggacgaggccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagacgttgttgttctcggcc
acgctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctg
gtcgtcgaaaccgaaagcatcaccgctgcgcgggtgcgccagcgcatctatttcccctcc
gacgaagagaagcagacgctgctgttgggcttgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaataccaaggcgttcgtggagcgcgtggcgcgcaccctggagcggcac
ggctaccgggtcggcgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctc
aaccgcttccagaaaggccagctcgaaatcctggtcgccaccgacgtggctgcgcgcggt
ctgcatatcgatggcgtcaagtacgtctacaactacgacttgccgttcgacgccgaagac
tacgtccatcgcatcggccgcaccgcacgcctgggcgaggaaggcgatgcgatcagcttc
gcctgcgaacgctatgcgatgagcctgccggacatcgaggcctatatcgagcagaagatc
ccggtcgagccggtgacgtccgaactgctgacgccgctgccgcgtgcgccacgcgtgccg
gtggaaggcgaagaggccgacgacgacgctggcgacagcgtgggcacgatcttccgcgaa
gcgcgcgagcagcgcgccgccgaagaacagcgtcgcggtggcgggcgcagtggttcgggc
gggtcgcgcagcggcagtggcggtggcggtggtcgccgcgaaggcgccggtgccgatggc
aagccgcgtccgcgtcgcaagccacgggtggaaggccaggcgcctgcaactgcggcgtcg
accgaacatccggtcgttgccgcagcggcgggacaggcaccttccgcgggcgtggccgat
gccgagcgcgcgccacgcaagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgcc
gagccggcagtggcatccacgccggttcccgcacctgccgcaccgcgtaagcccacccag
gtggttgccaagccggtgcgtgccgccgccaagccgtcgggcagcccctcgctgctcagc
cggatcggccgccgactgcgttcgctggtctcaggcaactga
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