Xanthomonas euvesicatoria pv. vesicatoria: XCV4058
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Entry
XCV4058 CDS
T00288
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xcv
Xanthomonas euvesicatoria pv. vesicatoria
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcv03016
]
XCV4058
Enzymes [BR:
xcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
XCV4058
Transfer RNA biogenesis [BR:
xcv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
XCV4058
Prokaryotic type
tRNA splicing ligases
XCV4058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
CAJ25789
UniProt:
Q3BN74
LinkDB
All DBs
Position
4658139..4659371
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AA seq
410 aa
AA seq
DB search
MTTMSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHL
GKGATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDNLAQLRSSIERSVPVGN
GRGGEHRKLPVSIETRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLD
ETDAVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYV
EAVSWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHAGEELLITR
KGAVSARVGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHR
QATAHVECRKDAAVLDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaatgagtacatcacaacactttgaatttctgcatgccgagggcagcaccacc
ccgatcaagggctgggtgcgcggcgtgcccctggaagagcaggcgcatgcgcagctgcgc
aatatcgcggcggtaccgtttgtcggtccgtgggtagcggtgatgcccgacgtacacctg
ggtaaaggcgcaaccgtgggctcggtcattccaacccgtggcgcgatcatcccggcggcg
gtcggcgtggatatcggctgcggcatggctgcggtgcgcaccacgctgcgcgccaacgac
ctgcccgacaatctggcgcaattgcgctccagcatcgagcgtagcgtgccggtgggcaat
ggacgtggcggcgagcatcgcaagctgccggttagcatcgagacccgcattgcgcagtcc
gggctggtgcagcgtctggatgcgatcaagcagcagcacaagcgcatccgtaccgacaag
ctggactgccagatcggcacgctgggcggcggcaaccacttcatcgagatctgcctggac
gaaaccgatgcggtatgggtgatgctgcacagcggttcgcgcggcaccggcaacctgatc
ggcacgtacttcatcgagcgcgcgcgcgaacaactggcgcatcgcgtgttgggtttccat
ctgcccgacaaggacctggccttcttcatgcagggcgagccgttgttcgacgagtacgtc
gaagcggtgtcgtgggcgcaggattacgcccgcgaaaatcgcgaggcgatgatggcgcgc
gtgctggccgagatgcgtcaccgcttgcccaaattccagctggaaaagctcgcagtcaat
tgccaccacaactacgtgcagaaggaaacgcacgctggtgaggaattgttgatcacccgc
aagggcgcagtgagcgctcgtgtcggcgagctgggcatcattccgggcagcatgggcacg
cgcagctacatcgtgcgtgggttgggcaacgccgacagtttccacagctgcagccacggc
gcggggcgtgtgatgagcaggaccgctgcacgcgcgcagatcaccctggcacagcatcgt
caggccaccgcacatgtggaatgccgcaaggacgcggcggtgctcgacgagtcgcctgca
gcgtacaagtccatcgatgcagtgatggcggcgcagcaggacctggtcgaggtgctgcac
accttgcgccaggtggtgtgcatcaagggatag
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