Xanthomonas citri pv. citri MN10: J162_02261
Help
Entry
J162_02261 CDS
T03779
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xcw
Xanthomonas citri pv. citri MN10
Pathway
xcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J162_02261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcw03019
]
J162_02261
03009 Ribosome biogenesis [BR:
xcw03009
]
J162_02261
Enzymes [BR:
xcw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J162_02261
Messenger RNA biogenesis [BR:
xcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J162_02261
Ribosome biogenesis [BR:
xcw03009
]
Prokaryotic type
rRNA processing factors
J162_02261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AJZ04390
UniProt:
A0A0U5BSZ3
LinkDB
All DBs
Position
complement(2453911..2457576)
Genome browser
AA seq
1221 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPVPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNR
SERGERGGQRRDGRDARNGGNSGNQQRGNGGNGNGANKERRDERRQPANAQGAQNGAQAQ
QQVQVPKPPRNEAQAPKPQQQKPKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAA
QTPTPTAATATTSSVVSAIADAAAAPPTNAQTNAHEAAQAHPVDVTVSESTADRGADANA
AAPAQEAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDSDADND
LDGDSEGDDAGMHAHASAAPRAGQPEFDFDDDAPAPAVRAKPEPAVQATAKPRPVPKERA
EPQVGSDTASTTAPVSNTVPASQPSATPVANADAARERPAAPVAATDATAKPAPAATAST
VAGTEGAAAQAAEQRPATIAQQASATPAPIAAPAPGVSAPAAAVAPAAGTAPVAAAVAPA
PAVASPVTSNAATSSPQQPSAPASAAPPAAAQAAKPDQQQPAASADVETPSVQATPVQPA
RATPAEDLSAPAAASPASQAAVVTVTSPHAEQSASQAPSSEVATTSTSTVVQASPSADTA
PVRRPYAPVQTTMLDALSPNEAAPAASSASKPPAAPAAAQESQADKPKPTVVVSEAVKPV
APSAEADRPRDDDSNKPRGDH
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctataagggccgtattacccggcttgagccttccctggaagcggcgttcgtggactac
ggcgccgagcgtcatggcttcctgccgttgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccataacaagtcgaccattcgcgagcttctgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cgcatcgagggtgaagaccgcgccgcgttgaaggaagcgctggacaagctcgacattcct
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactatctgctgcagacctggaaggcgattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgggccgatgtcggcgagatcctggtcgatacgccggagctgtacgccgacgcccag
gagttcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtc
gacgtcaactcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagacc
aatctggaagcggcagaagaagtcgcacgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagttgggccgtatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctacgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtggaaatcgccaattacctgctcaacgaaaagcgtagtgcgctgcgtgaaatc
gagcagcgccatgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgaggcaccccgcgcaagcttccggtgcatgcactgaccaaggcgcagttgaacatt
cctgccgctccggcggtcacgtcgatcaagccgagccaaccggcaccggtgcgcgaagaa
gcccctgccccggtcgcgcccgtcgctgctccggtgccggtggtgaccgtgcccattccg
gcaccggtcactggcgtggtgggctggctgaagcggatcttcggcggcgtcgaaccggtt
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgt
agcgagcgcggcgagcgtggcggtcagcgccgcgatggccgcgatgcccgcaacggcggc
aacagtggcaaccagcaacgtggcaatggcggcaacggcaacggcgccaacaaggaacgc
cgtgacgagcgtcgtcagcctgccaacgcccagggcgcgcagaatggcgcacaggcacag
cagcaggtgcaggtgcccaagccgccgcgcaacgaagcgcaggcgccaaagccgcagcag
cagaagcccaagccgcagaaccagagcccgcgtccgccacgtgcgcctgcacagcaggat
ggcgcgccggccgagcgtcagccgcgtccggcacgccaggatgaaggcacggcagcggcg
cagaccccgacccccactgccgcaacggcaaccacgtcgagcgtggtgtccgccattgcc
gatgccgctgccgctccacccaccaatgcgcagaccaacgctcatgaagcggcgcaggcg
catccggtcgatgtcacagtgagcgaatccaccgctgatcgcggtgccgacgcgaatgcg
gctgcaccggctcaggaggccgcaggcgacgatgcagccaatggggaaggcggaagccgc
cgtcgccgcggtcgtcgtggtggccgccgtcgtcgtcgtggcgctggcgccaacggagaa
ggtggtgccagcgtcgatggtctggagggcgacgatctggacagcgatgccgacaacgat
ctcgatggcgacagcgaaggtgacgacgctggtatgcatgcgcatgcctcggccgcaccg
cgcgctggccagccggaattcgacttcgacgacgacgcaccggcacccgcggtgcgcgcc
aagccagaacccgcggtccaggcaaccgccaagccgcgtccggttcccaaggagcgtgca
gagccacaggtcggcagtgatacggcctcgaccactgcgccggtttcaaataccgtgccg
gcatcgcagccgtcagcaacacccgttgccaacgctgacgccgcccgcgagcgccctgct
gcgcccgtcgcggctacggacgcaactgccaaacccgcgccagctgccacagcgtcgacg
gttgccggcaccgagggtgcggcagcgcaggctgcggaacagcgccccgcaacgatcgct
cagcaggcatccgctaccccggcaccgattgccgctcccgcaccaggggtatccgctccg
gcagctgcagtggctcccgccgccgggacggcaccggtcgcggctgccgtggctccggca
ccggctgtcgcatcgcctgtgaccagcaatgcggcgacaagcagcccgcagcagccttcg
gcgccggccagtgcggctccgcctgccgctgcccaggccgcgaagcccgaccaacagcaa
cccgctgcgtcggcggacgtcgaaacgccttcggtgcaagccactccggtgcagccggca
cgtgcaacgcctgctgaggacctatcggcacctgcggcagcttccccggcgtcgcaggcc
gcggtggtcacggtcacttcgccgcacgccgagcagtctgcttcacaggcgccatcttcc
gaggtggcaacgacctctacctcgacggttgtgcaggcaagcccgagtgcagacaccgcg
cccgtgcgcaggccatatgctccggtgcagaccaccatgctcgatgcgctgagcccgaac
gaggctgcgccagcggcctcctcggccagcaagcctccggcagcccctgcagcagcgcag
gaatcgcaggcagacaagcccaagccgacggtggttgtgtccgaagcagtcaagccagtt
gctccatcggccgaagccgaccggccgcgggatgacgacagcaacaagccgcgtggcgat
cactga
DBGET
integrated database retrieval system
