Xanthomonas citri pv. citri MN10: J162_03986
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Entry
J162_03986 CDS
T03779
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xcw
Xanthomonas citri pv. citri MN10
Pathway
xcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J162_03986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcw03021
]
J162_03986
03019 Messenger RNA biogenesis [BR:
xcw03019
]
J162_03986
Transcription machinery [BR:
xcw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
J162_03986
Messenger RNA biogenesis [BR:
xcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J162_03986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJZ06093
UniProt:
A0A0U5FMJ8
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All DBs
Position
4481467..4483365
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AA seq
632 aa
AA seq
DB search
MSDHPSSDTGSSVDAPVEKRVRKPRVSKTAAATEEAGAQQPNLPLPASPAPEAPRAAQAP
SRAADPAPAQTSSDGAQAGQAPSAGHGSDTHGEPREGGQSQQQRFNQAQQQQNQNQGQNQ
GQGQGQQQGQNQNQNQNQNAGQHQQGQGGQGQGQGQNQQGQNQQGNRRDRFRNRRDRGPR
DRFGNDGGMPSSDGSNEPFIARPHPAVPEGFPVYSLSDLKRMPAQKLLDIADQLNIQEGV
ARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQI
RRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTPLFPRRRFR
LERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITTNHPEVHMIV
LLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDS
ITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSK
MDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKL
LHPMDEIAAMEFLLDKMKTTKSNDEFFSSMKR
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatcatccttcctccgataccgggagcagcgtcgacgctcccgtcgagaagcgc
gtgcgcaagccgcgcgtgagcaagaccgccgccgccactgaagaggctggcgcacagcag
cccaacctgcccttgcccgccagtcccgcacccgaagcaccccgtgccgcgcaggcaccg
tcgcgcgctgccgatccggcaccggcgcagacgtccagcgatggcgcccaggccggtcag
gcgcccagcgccggccacggcagcgacacccacggcgagccccgcgagggcggccagtcg
cagcagcagcgcttcaatcaggcgcagcaacagcagaaccagaatcaaggccagaaccag
ggccaaggccaaggtcagcagcagggccagaaccagaaccagaaccagaaccaaaacgcc
ggccagcatcagcaaggccagggcggtcagggtcagggtcagggccaaaaccagcaaggc
cagaaccagcagggcaaccgccgtgaccggttccgcaaccgccgcgatcgcggcccgcgc
gaccgcttcggcaacgacggcggcatgccctcgtccgacggcagcaacgaaccgttcatc
gcgcgtccgcatccggccgtgccggaaggttttccggtgtattcgctgagcgacctcaag
cggatgccggcgcagaagctgctggatatcgccgaccagctcaatattcaggaaggcgtg
gcgcgtgcgcgcaagcaggacgtgatcttcgccctgctcaaggtgctgacccgtcatggt
gaaggcgttgccgccgacggcgtgctggaaatcctgcccgacggcttcggtttcctgcgt
gcggcagaagccagctacctggccggcccggacgatacctatatttcgcccagccagatc
cgccgcttcaacctgcgtaccggcgaccacctctccggccgcatccgcttcccgaaggac
ggcgaacgctatttcgcgctgtcgatcgtcgacaccatcaatggcgagccgctggaagcg
agcaagaacaaggtcctgttcgagaacctgaccccgctgttcccgcgccgccgcttccgt
ctggagcgtggcgatggctccaccgaggacatcaccggccgcatcctggatctgatggca
ccgcagggcaagggtcagcgtgcgctgatcgtctccccgcccaaggccggtaagacgatg
atgatgcagcaggtggccacggccatcaccaccaatcatcccgaagtgcacatgatcgtg
ctgctcatcgacgagcgcccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaa
gtcatctcctccacgttcgacgagccggctgcgcgtcacgtgcaggtcgccgagatggtg
atcgagcgggccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctggactcc
atcacccgcctggcgcgcgcctacaacaacgtagtgcccagctccggcaaggtgctcacc
ggcggtgtggatgccaatgcgttgcaccgcccgaagcgcttcttcggcgcggcgcgtaac
gtggaagaaggcggctcgctgaccatcatcgccacggcgctggtggaaaccggcagcaag
atggacgaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcatctgaac
cgtcgcatcaccgaaaagcgcgtgtacccggcaatcgacatcaaccgttcgggcacgcgt
cgcgaagatctgctgatcgagccggagttgctgcagaagatctggatcctgcgcaagctg
ctgcacccgatggacgaaatcgcagcaatggaattcctgttggacaagatgaagaccacc
aagtccaacgacgagttcttcagttcgatgaagcgctga
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