Xanthomonas cucurbitae: EBN15_03750
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Entry
EBN15_03750 CDS
T06553
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcz
Xanthomonas cucurbitae
Pathway
xcz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EBN15_03750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcz03021
]
EBN15_03750 (rpoC)
03400 DNA repair and recombination proteins [BR:
xcz03400
]
EBN15_03750 (rpoC)
Enzymes [BR:
xcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EBN15_03750 (rpoC)
Transcription machinery [BR:
xcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EBN15_03750 (rpoC)
DNA repair and recombination proteins [BR:
xcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EBN15_03750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QHG86235
LinkDB
All DBs
Position
884369..888586
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDIDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGQTIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLRERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQGVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLTTRSELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVVEPVATVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtacgtcgtgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctggagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgatttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgcccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtaccgtcgcgtcatcaaccgcaacaaccgtctgcgt
cgcctgctggagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggccgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggcggccaagaagctg
gtcgagcgcgaagaggccgaggtgtgggacatcctcgaagaagtcatccgcgaacacccg
gtgctgctgaaccgtgcgccgaccctgcatcgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccctcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgttcgccaacaccagcgaagtgaagcgcgcatacgacaatcgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggacatcgacgctgtc
gacggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgagatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgcctcatcaactccagctaccgcctgctgggcttgaaggacaccgtcgtg
ttcgccgacaagctgatgtacaccggctacgcctacgccacccgcgccggcgtgtcgatc
ggcatcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggtcgagaacgccaagggccagaccatcgaccagaagtcgatg
aactcgctgtacatcatggctgattccggcgcgcgtggtagccaggcgcagatccgccag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggccaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggcgcg
cgtaagggtctggccgacaccgcgctcaagaccgccaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgattaccgaagtcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgagcgcgtg
ctgggccgtgtcgtggccgaagacgtctacctgccgggcaacgacgaagagccgatcgtc
acccgcaacacgctgctggacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtacgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgc
tacggtcgcgatcttgcacgcggtcaccaggtcaacatcggtgaagcggtcggcgtcatc
gcggcccagtccatcggcgagccgggcacccagctgaccatgcgtacgttccacatcggt
ggtgcggcctcgcgtgcggcggcagtggacaacatcacggtcaagacgaccggttcggtg
aagttcaacaacctgaagtcggtcgagcatgccaacggctcgctggtagcggtgtcgcgc
tcgggcgagttgtcggtgctcgacggccacggccgcgagcgtgagcgctacaagctgccc
tacggtgccaccatcaccgccaaggacggtgatgcggtcaaggccggccagggcgtggcc
aactgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatc
gacttcgtcgacggcgtcaccgtcatcgagaaaaccgacgaactgaccggtctggcctcg
cgtgaaatcaccgacccgaagcgtcgcggtgcacaggccaaggaactgcggccgatcgtg
cgcatcgtcgacggcaagggcaacgacctgaccatcccgaacaccgatctgccggcgcag
tacttgctgccgccgcgctccatcgtcaacctgcaggacggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgtcgccgacctgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgttcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctcatcatcaag
gacaccgatggttcggaacacgaagagctgatccccaagtatcgccagatcatcgtgttc
gaaggcgagcatgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgagccgctggcggcgtatctggtcaaggaaatccaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacattgaggtgattacccgccag
atgttgcgcaaggtcgagatcgtcgatcagggcaacagcaagttcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcacgcctgaccacgcgttctgagctgccg
gccaagtacgacccggtgctgttgggcatcaccaaggcctcgctggccaccgagtcgttc
atttcggcggcctcgttccaggaaaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggcctgaaggagaacgtcatcgtgggtcgtctgatcccggcc
ggtaccggtctggcgtatcacgccggccgtcgcaaggcctcgggtctgaccgactcggaa
atggaaacgctgtcgggcaagccggcggtggtcgagccggtcgccaccgtggccgacgct
ggcgcggacgaagagtaa
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integrated database retrieval system
