KEGG   Xanthomonas cucurbitae: EBN15_07455
Entry
EBN15_07455       CDS       T06553                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
xcz  Xanthomonas cucurbitae
Pathway
xcz02024  Quorum sensing
xcz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xcz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EBN15_07455
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    EBN15_07455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xcz03019]
    EBN15_07455
   03036 Chromosome and associated proteins [BR:xcz03036]
    EBN15_07455
Messenger RNA biogenesis [BR:xcz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     EBN15_07455
Chromosome and associated proteins [BR:xcz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    EBN15_07455
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QHG86857
LinkDB
Position
1706939..1707217
AA seq 92 aa
MAKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQSNEGNQAEDDDVEQ
NT seq 279 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaggacccgttcctcaacgcgctgcggcgcgagcgggtg
ccggtgtctgtgtatctggtcaacggcatcaagctgcagggcacgatcgagtcgttcgac
cagttcgtggtcctgctgcgcaacaccgtgagtcagatggtctacaagcacgccatctcc
acggtcgtgccggcgcgcaatgtgcgcgtggggccgggtggcgggtatgtgcaatccaat
gaaggcaatcaggcggaagatgacgacgtcgagcagtaa

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