Xanthomonas cucurbitae: EBN15_12850
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Entry
EBN15_12850 CDS
T06553
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xcz
Xanthomonas cucurbitae
Pathway
xcz02020
Two-component system
xcz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EBN15_12850
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EBN15_12850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcz03021
]
EBN15_12850
Transcription machinery [BR:
xcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EBN15_12850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_AsnC-type
HTH_Crp_2
HTH_IclR
HTH_23
Sigma70_r4
Sigma70_r4_2
HTH_11
HTH_Tnp_ISL3
HTH_28
MarR
HTH_36
Motif
Other DBs
NCBI-ProteinID:
QHG87694
UniProt:
A0A6P1L7B0
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All DBs
Position
2944579..2946015
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AA seq
478 aa
AA seq
DB search
MKARLQTSLGQQLVMTPQLRQAIKLLQMSSTELELELAEAVETNPLLEWADEAAHAASQA
PAESASSSSDDTRHEDAAPAERDDDWSQDELQWTGSGSGGSFDDDDSGDAVERVADSETL
ADHLLWQLHLSPLSPRDRQIGATLIDALDEDGYLREPLSTILETLALGAAVDEAEVLTVL
HQIQRFDPVGVGARTLGECLALQLAVLDPATPGRALALQIVAGPLERLPRSGVAGLAHEL
KRPAADVEQAVHLVRSLDPRPGKQIGELSQDTYVVPDCVIWRQRGVWRASLAGRSQPKVT
IHRGYENLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGA
QALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIALRSFFASGIDTDSGGEASSTA
IQAMIRRLIEAENPRKPLSDAKLAELLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaggctccagacatcgctaggacagcagttggtcatgacgccgcaattgcgt
caggcgatcaagctattgcagatgtccagcaccgagctggagctggaactggccgaagcg
gtggagaccaacccgctgctggagtgggccgacgaagccgcgcacgcggccagccaggcg
ccggccgaatccgcatcgtcctccagcgacgatacccggcacgaagacgccgcccctgcc
gaacgcgacgacgactggtcgcaggacgagctgcaatggacaggttcgggaagcggcggc
agcttcgacgacgacgactccggcgatgccgtcgaacgcgtggccgactccgagacactg
gccgaccatctgctctggcaacttcacctgtcgccgctgtcgccgcgcgaccgccagatc
ggcgcgaccctgatcgacgcgctggacgaggacggctacctgcgcgaaccgctatcgacc
atcctcgagaccctggcactgggcgcggcggtcgatgaggccgaagtcctcaccgtgctg
caccagatccagcgcttcgacccggtcggcgtgggcgcccgcaccctgggcgagtgcctg
gcattgcagctggcggtgctcgacccggccaccccgggccgcgcgctggcgctgcagatc
gtggccggcccgctggaacggctgccgcgcagcggcgtggccggcctggcgcacgagctc
aagcgcccggctgccgacgtggaacaggcggtgcacctggtgcgctcgctggacccacgc
ccgggcaagcagatcggcgagctatcccaggacacctatgtggtgcccgactgcgtgatc
tggcgccagcgtggagtctggcgcgcatcgctggccggccgctcgcagcccaaggtcacc
attcaccgcggttacgagaacctgatccgcagctgtggcgagtccgacgccggctatctg
cgcggccaactgcaggaagcgcgctggctgctcaagagcctggaggcgcgcggcgagacc
ttgttacgggtggtgcgctgcctgctgcagcaccaggccggattcctggaattcggtgca
caggcactgcggccattgaccctgcgcgagatcgccggcgaactcggcctgcatgaatcg
accatttcccgcgccattgcccgcaaatacgtgcgcaccccgcgcggcaccatcgcgttg
cgctcgttcttcgcctccggcatcgacaccgacagcggcggcgaagcctccagcacggcc
atccaggccatgatccggcgcctgatcgaggcggaaaacccgcgcaaaccgctatctgac
gccaagctggccgagctgttgaagacttccggcgtaccagtggcgcggcgcaccgttgcg
aagtatcgtgaggccatgaacatttccgcctcccacgaacgcgtgcgcatcgcctga
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