Xanthomonas cucurbitae: EBN15_13695
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Entry
EBN15_13695 CDS
T06553
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xcz
Xanthomonas cucurbitae
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcz03019
]
EBN15_13695 (hrpA)
Enzymes [BR:
xcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EBN15_13695 (hrpA)
Messenger RNA biogenesis [BR:
xcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EBN15_13695 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
nSTAND3
SRP54
NACHT
nSTAND_NTPase5
T2SSE
Cas3-like_C_2
AAA_23
AAA_25
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QHG87830
LinkDB
All DBs
Position
complement(3151050..3155162)
Genome browser
AA seq
1370 aa
AA seq
DB search
MSAIDTDLADTLRERRRAVDGAMSRDRGRLLGLWSRWHGKPGNVQAREAFEHALAASQAQ
RQARAEQQPAITLDAQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVADELKTPLGTTVGFQVRFTDRVGEQSRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLGKRPDLKLIVTSATIDTERFAQH
FDNAPVISVEGRTFPVDVRYRPLDGEAGGDDDAAGRDGERTVNDAIVAAIDEITRLDPRG
DVLMFLPGEREIRDAHHSLERRKYRDTEVVPLYARLSAADQDRVFNPGPRRRLVLATNVA
ETSLTVPRIRYVVDPGFARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGICYRL
YAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQLLE
LGAIDAERRLTAIGRQMARLPVDVKLARMLVAAQQHGCLREMIVIAAFLGIQDPRERPPE
AREAADNAHALFADARSEFVGILRLWEAYRQVHEDLTQSKLRDWCGRHFLGFLRMREWRE
LHRQLRLLCAELGWSEEPATAMLAPLLAGASAPASADGHNANRPTRGQLHRAARLAREGK
ADPAAPSVQPAAVPPNRQAEAAEASARTSERERAAAYQALHRALLAGLPTQIGHRTEKGD
FLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELGHLLARK
HFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAASHDLFVRQGLVTGEITTRA
AFVADNLRVLEQAREEEAKLRRAGIVADEDWQARWYLDRIPAELHSASGLDAWWKTLPTD
KRRSLHWSLNDLLPGEGSEADRFPKYFPLGDARLPLHYRFEPGAIDDGVTLEVPLHLLNA
LDPARLSWLAPGFVADKASALIRSLPKAQRRNFVPAPDFGRAFYEAYSLPSADDMRGELA
RFLSKATGVQVTALDFDEQALDTHLLMNLRLRDDGGNVLAESRDLDGLRARFGDRAGQAF
AARAGRALAAEGLRDFPAAPIPEQVAGEAGVPAYPALVDQGEDAALRIFADRNEAVQAHP
RGVRRLLEIALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLAEGLGA
IRDPGAFAQRRDDAIKRLFGEAMERLRLAESILGAVAELKPLLEAPLMGWARGNLDDMEQ
QLRNLVHAGFLRQTPAEALANYPRYLKAMILRTERAKRDPARDQARMLELKPFVDALEDA
AARGLQQRPDWQALRWDLEELRVSVFAQELGAKSGVSAKKLAQRVAALRG
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgacaccgaccttgccgataccttgcgcgagcgtcgccgcgccgtcgat
ggcgcgatgagccgcgaccgtgggcgcttgctgggcctgtggtctcggtggcatggcaag
ccgggcaacgtgcaggcgcgcgaggcgttcgagcacgcattggcggcgtcgcaggcgcag
cggcaggcgcgtgccgagcaacagccggccatcaccctggatgcgcagctgccgatcgcg
cgcgaggccgagcgcatcattgcgttgatccgcgaccaccaagtggtggtgatcgccggc
gagaccggctcgggcaagaccacccagctgcccaagttatgcctggccgcagggcgcggt
gcggccggcatgatcggctgcacccagccgcgccggattgccgcgcgcgcggtggccgca
cgcgtggccgacgagctgaagacgccgctcggtaccacggtgggctttcaggtgcgcttc
accgaccgggtaggcgagcagtcccgcatcaagttcatgaccgacggcatcctgctggcc
gagatcgccagcgaccgctggctgtcggcctacgacaccatcatcgtggacgaggcgcac
gaacgcagcctcaacatcgatttcctgctgggctatctcaaacagttgctgggcaagcgc
cccgacctgaagttgatcgtcacctcggccaccatcgataccgagcgctttgcccagcat
ttcgacaacgcgccggtcatcagcgtggaaggccggaccttcccggtggacgtgcgttat
cggccgctcgacggcgaggcgggcggggatgacgacgctgccgggcgcgacggcgaacgc
accgtcaacgatgccatcgtggcggcgatcgacgagatcacccgcctggacccgcgtggc
gatgtgctgatgttcctgccgggcgagcgcgagatccgcgatgcgcatcattccctggag
cggcgcaagtaccgcgacaccgaagtggtgccgctgtatgcgcggctctctgcggccgac
caggaccgggtgttcaaccccggcccgcgtcggcgcctggtgctggccaccaacgtcgcc
gagacctcgctgacggtgccgcgcatccgctatgtggtggacccgggctttgcccgcgtc
aaacgctacagcccgcggcagaagctggatcgcctgcatatcgaaccgatttcgcaggcc
agcgccaaccagcgcatgggccgttgcgggcggattgccgagggcatctgctaccggctg
tatgccgaagccgactttgccgcgcgcccggccttcaccgatccggagatccggcgctcg
tcgttgtcgggggtgatcctgcgcatgctgcagctggggttgggacggatcgaggacttt
ccgttcctggaagcgccggacgagcgtgcggtcgcagacggatggcagcaattgctggag
ctgggtgcgatcgatgcagagcggcgtttgaccgccatcggccggcagatggcgcgcctg
ccggtggacgtcaagctggcacgcatgctggtggctgcgcagcagcacggctgcctgcgc
gagatgatcgtcattgcagcgttcctgggcatccaggacccgcgcgagcgcccacccgaa
gcacgcgaggcggccgacaatgcacatgcgctgtttgccgatgcgcgctcggagttcgtc
ggcatcctgcgcttgtgggaggcgtaccggcaggtgcacgaagacctcacccagtccaag
ttgcgcgattggtgcggccggcatttcctgggtttcctgcgcatgcgcgagtggcgcgaa
ctgcatcggcagctgcgtctgttgtgcgcagaactgggctggagcgaggagccggccacg
gcaatgctggcgccgctgctagccggcgccagcgcgccggctagcgccgatggccacaac
gccaaccggcccacgcgcgggcagctgcaccgcgccgcgcggctggcacgcgagggcaag
gccgatccggctgcgccatccgtgcagcctgcagcggttccgcccaaccggcaggccgag
gccgccgaggcatcggcacgcaccagcgagcgtgaacgtgctgcggcgtatcaggcgctg
caccgcgcgctgctggccggcctgcccacgcagatcggccaccgcaccgaaaaaggggat
ttcctggccgcacggcagcgccgcttcgtgccgtttcccggctcggcgttggcacgcaag
ccgccgccgtggatcctggccgccacgctgctggacacgcagaaagtctggggcatgacc
aatgcggcgatcgagccggattgggccatcgccgaattggggcatctgctggcgcgcaag
catttcgatgcgcattggtcgcgcgcgcaggggcaggtggtggcgtccgagcagatcagt
ctgttcgggctggtgctggcgccgaagaagccggtgcacttcggcaagatcgatccggcg
gcctcgcatgacctgttcgtgcgccagggcctggtgaccggcgagatcaccacgcgcgca
gcgttcgtggccgacaacctgcgcgtgctggaacaggcgcgcgaggaagaggccaagctg
cgtcgcgccggtatcgtggccgacgaggactggcaggcgcgctggtatctggaccgcatt
ccggccgagctgcattcggccagcgggctggacgcctggtggaagacgctgccgaccgac
aagcgccgcagcctgcactggagcttgaacgatctgctgcccggcgaaggcagcgaggcc
gaccgattcccgaaatacttcccactgggcgatgcgcggttgccgttgcattaccgcttc
gagccgggcgccatcgacgatggcgtgacgctggaggtgccgctgcatctgctcaatgca
ctggatccggcgcggttgtcctggctggcaccgggcttcgtcgccgacaaggcgtcggcg
ctgatccgcagcctgcccaaggcgcaacgacgcaatttcgtgccggcgccggattttggc
cgggcgttctacgaggcctatagcctgccgtcggccgacgacatgcgcggcgagctggcg
cgtttcctgtccaaggccaccggcgtgcaggtgacagcgctggacttcgatgagcaggcg
ctggatacccatttgctgatgaacctgcgactgcgcgatgacggcggcaatgtgctggcc
gaatcgcgcgatctggatgggctgcgcgcgcgtttcggcgaccgtgccggccaagcgttt
gccgcacgtgcggggcgtgcgctggccgccgaaggcctgcgcgactttccggctgcgccg
atccccgagcaggtggccggcgaagccggtgtgccggcgtatccggcgctggtggatcag
ggcgaggatgcagcgctacgcatcttcgccgaccgcaacgaagcggtgcaggcgcatccg
cgtggcgtgcggcggctgctggaaatcgccctggccgacaagatcaagcaggcgcgcaag
cagctgccggtgtcgcccaagaccgggctgctgtatgcggcgatcgaatcgcaggaacgc
ctgcgcggcgatctggtcgatgccgcgctcaatgcggtgctggccgagggactgggcgca
atccgcgacccgggcgcgtttgcgcagcgccgcgacgatgcgatcaagcgcctgttcggc
gaagcgatggaacgcctcaggctggccgaaagcatcctgggtgcggtggccgaattgaag
ccgctgctggaagccccgttgatgggctgggcgcgcggcaacctggacgatatggagcaa
cagttgcgtaacctggtgcatgccggcttcctgcgccagaccccggccgaagcgctggcc
aattatccgcgctatctcaaggcgatgatcctgcgcaccgaacgtgccaagcgcgacccg
gcgcgtgaccaggcgcgcatgctggaactcaagccgttcgtggacgcattggaggacgcg
gctgcgcgcgggctgcagcagcgccccgattggcaggcgctgcgttgggatctggaagag
ctgcgagtgtcggtattcgcgcaggagctgggggccaagtccggcgtgtcggcgaagaaa
ctggcgcagcgggtggcggcgttgcgcggctga
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