Xanthomonas cucurbitae: EBN15_18015
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Entry
EBN15_18015 CDS
T06553
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xcz
Xanthomonas cucurbitae
Pathway
xcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBN15_18015 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcz03019
]
EBN15_18015 (rhlB)
Enzymes [BR:
xcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EBN15_18015 (rhlB)
Messenger RNA biogenesis [BR:
xcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EBN15_18015 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Helicase_C_2
baeRF_family2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHG88561
LinkDB
All DBs
Position
complement(4133227..4134936)
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AA seq
569 aa
AA seq
DB search
MSDKPLTDLTFSSFELHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAELGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS
DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRTPVEGEDADADAGDSVGTIFRE
AREQRAADEARRGGGRSGPGGGGSRSGGGRREGGSADGKPRPRRKPRVEGEAAATPAAAP
VVAAAAEQAPSTIVSDAERAPRKRRRRRNGRPVEGGEPVVASTPVPAPAAPRKPTQVVAK
PVRAAAKPAGSPSLLSRIGRRLRSLVSGN
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgactgatttgactttttcctcgttcgagctgcatccggcgctg
gtcgccgggctggagagcgccgggttcacccgctgtaccccgatccaggcgctcaccctg
ccggtggccctgcccggcggtgacgtcgccggccaggcgcagaccggcaccggcaagacg
ctggcgttcctggtggcggtgatgaaccgcctgctgagccgcccggcgctggccgaccgc
aagccggaggacccgcgcgcgctgatcctggcgcccacccgcgagctggccatccagatc
cacaaggatgcggtcaagttcggcgccgagctggggctgcgctttgcgctggtctacggc
ggggtggactacgacaagcagcgcgagctgctgcaacagggcgtggacgtcatcatcgcc
acgccgggccggctgatcgactacgtcaagcagcacaaggttgtctcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctacggcgcatgcccgagcgcggcacccgccagaccctgctgttctcggcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccggaaaagctg
gtggtggagaccgagaccatcaccgccgcacgggtgcgccagcgcatttacttcccctcc
gacgaagagaagcagacgctgctgctgggcctgctctcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaacaccaaggcgttcgtggagcgggtggcgcgcaccctggagcgtcat
ggctaccgggtgggcgtgctgtcgggcgacgtgccgcagaaaaagcgcgagtcgctgctc
aaccgcttccagaagggccagctggagatcctggtggccaccgacgtggccgcgcgcggc
ctgcatatcgacggggtcaagtacgtctacaactacgacctgccgttcgatgcggaagac
tacgtgcaccgcatcggccgcaccgcgcgcctgggcgaggagggcgatgcgatcagcttc
gcctgcgagcgctacgcaatgagcctgccggacatcgaggcctacatcgagcagaagatc
ccggtcgagccggtgacctccgaattgctgaccccgctgccgcgcgcgccgcgcacgccg
gtggaaggcgaagacgccgacgccgacgctggcgacagcgtgggcaccatcttccgcgag
gcacgcgaacagcgtgcggccgatgaagcccgccgtggcggcggtcgcagcggtccgggc
ggtggcggttcgcgcagtggtggcggtcgtcgtgaaggcggcagtgccgatggcaagccg
cgtccgcgccgcaagccgcgggtggaaggcgaggcggctgcaacgcccgccgccgcaccc
gtggtagcggcagcggccgaacaggcaccctcgacgatcgtcagcgacgccgagcgcgcg
ccgcgcaagcgccgtcgtcgtcgcaacggccggccggtcgaagggggcgagccggtcgtg
gcatccacgcccgtgccggcacccgccgcgccgcgcaagcccacccaggtggtcgccaag
ccggtgcgtgccgcagccaagccggccggcagcccgtcgttgctgagccggatcggacgc
cgcctgcgctcgctggtgtcgggcaactga
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