Xanthobacter dioxanivorans: EZH22_16225
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Entry
EZH22_16225 CDS
T07733
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xdi
Xanthobacter dioxanivorans
Pathway
xdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EZH22_16225 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xdi03021
]
EZH22_16225 (rpoB)
03400 DNA repair and recombination proteins [BR:
xdi03400
]
EZH22_16225 (rpoB)
Enzymes [BR:
xdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EZH22_16225 (rpoB)
Transcription machinery [BR:
xdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EZH22_16225 (rpoB)
DNA repair and recombination proteins [BR:
xdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EZH22_16225 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
DUF7726
Motif
Other DBs
NCBI-ProteinID:
QRG04710
UniProt:
A0A974PJE2
LinkDB
All DBs
Position
3487348..3491424
Genome browser
AA seq
1358 aa
AA seq
DB search
MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRDDDGLQAVFKSV
FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTGAKSV
KDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLYALGLDNEEILSTFYEKIPFERAK
GGWRMPFDPKRMKGYKAVSDLVDADTGEVVLEAGKKLTVRAARQLAEKGLKGLKISDEEM
IGQYIAEDLVDVRSGEIHAEAGEEITEKMLKLLEEAGYNEIPVLDIDHVNTGAYIRNTLS
ADKNVTREDALFDIYRVMRPGEPPTIDSAQAMFHSLFFDPERYDLSAVGRVKMNMRLDLD
CPDTVRVLRRDDILAVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRME
RAIKERMSSVDIDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPYR
RVVDSKVTDEVVYLSAMEEGKYYVAQANIPLDKDGRFEEDLIVCRHAGDVLLVAPDRVDF
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARDS
GAAIAARRTGVIDQVDATRIVIRATEEADPSKSGVDIYRLMKFQRSNQSTCINQRPLVRV
GDQVRKGDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSENIVKEDVFTSIHI
EEFECMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGES
PMTPEEKLLRAIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIEREEI
ERLAKDRDDEQAILDRNVYGRLIEILDGKTAIAGPKGFKKESVVTRELLTEYPRSQWWLF
AVADDAIMAELEAIRAQYDDSKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLGWA
CAGLGRQVAAAVDAYYAKQDLKPLRDRLETIYGKPEIDQLQDGELPELGENLRKGVPMAT
PVFDGAHEADIEQELERAGLDRSGQSTLFDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGEDTFESGIPESFNVLVKEMRSLGLNVDLENT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaacgttcaccggtcgtaagcggatccgcaagttcttcggcaagatcaaggaa
gtggccgagatgccgaacctcatcgaggttcagaaggcatcctacgaccagttcctgcag
atcgaggaacccaagggcggccgcgacgacgacggcctgcaggcggtgttcaagtcggta
ttccctatttccgacttctccggcgcggccatgctggagttcgtgcgctacgagttcgag
ccgcccaagtatgacgtggacgagtgccgccagcgcggcatgacgtttgccgccccgctc
aaggtgacgctccgcctcatcgtgttcgatgtggatcccgataccggcgccaagtcggtg
aaggacatcaaggagcaggacgtctacaccggcgacatcccgctgatgaccatgaacggc
acgttcatcgtgaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcgccgggc
gtgttcttcgaccacgacaagggcaagacgcactcctccggaaagctgctcttcgccgcg
cgcatcattccctatcgcggctcctggctcgacatcgagttcgacgccaaggacatcgtc
tatgcgcgtatcgaccggcgccggaagatcccggtgacgagcctgctctatgccctcggc
ctcgacaacgaggagatcctctcgaccttctacgagaagatccccttcgagcgggccaag
ggcggctggcgcatgccgttcgatcccaagcggatgaagggctacaaggccgtttccgac
ctggtggacgccgacaccggcgaggttgtgctcgaggccggcaagaagctgaccgtgcgc
gccgcccgccagctcgccgagaagggcctcaagggcctcaagatctccgacgaggagatg
atcggccagtacatcgccgaggacctcgtcgatgtgcgctccggcgagattcatgcggaa
gccggtgaggaaatcaccgagaagatgctgaagctgcttgaggaagccggctacaacgag
attccggtcctcgacatcgaccacgtcaacaccggcgcctacatccgcaatacgctgtcg
gccgacaagaacgtgacccgcgaggacgcgctcttcgacatctaccgcgtgatgcgcccg
ggcgagccgccgaccatcgattcggcgcaggccatgttccactcgctgttcttcgatccg
gagcgctacgacctttccgcggtcggccgcgtgaagatgaacatgcgcctcgacctcgac
tgccccgacaccgtgcgggtgctgcgccgcgacgacatcctcgccgtcatcaagacgctg
gtggagctgcgcgacggcaagggcgagatcgacgacatcgaccacctgggcaaccgccgg
gtgcgctcggtgggcgagctcatggagaaccagtatcgcgtcggcctgctgcgcatggag
cgcgccatcaaggagcgcatgtcgtcggtcgacatcgacaccgtgatgccgcaggacctc
atcaacgccaagccggtggcggcggcggtgcgcgagttcttcggctcgtcccagctgtcg
cagttcatggaccagaccaacccgctctcggagatcacccacaagcgccgcctctcggcg
cttggcccgggtggcctcacccgcgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acccattatggccgcatctgccccatcgagacgccggaaggcccgaacatcggccttatc
aactcgctggcgaccttcgcccgcgtgaacaagtacggcttcatcgaggcgccctaccgc
cgcgtggtggactcgaaggtcaccgatgaggtggtctatctctccgccatggaggagggg
aagtactacgtcgcgcaggccaatatcccgctcgacaaggacggccgcttcgaggaggac
ctgatcgtctgccgccatgcgggcgacgtgctcctggtcgcccccgaccgcgtcgacttc
atggacgtgtcgcccaagcagctggtgtcggtggccgcggcgctgatcccgttcctggag
aacgacgacgccaaccgcgcgctgatgggctccaacatgcagcgtcaggcggtgccgctg
gtgcgctcgcaggcgcccctcgtcggtaccggcatggaggccgtcgtcgcccgggattcg
ggtgccgccatcgccgcccgccgtaccggtgtgatcgaccaggtggatgccacccgtatc
gtcatccgcgccacggaagaggccgatccgtccaagtcgggcgtcgacatctaccggctg
atgaagttccagcgctccaaccagtccacctgcatcaaccagcgtccgctggtgcgcgtg
ggtgaccaggtgcgcaagggcgacatcatcgccgacggcccgtccacggagctcggcgag
ctcgcgctcggccgcaacgtgctcgtcgccttcatgccgtggaacggctacaacttcgag
gactcgatcctgctctcggagaacatcgtcaaggaagacgtgttcacctcgatccacatc
gaggaattcgagtgcatggcccgcgacacgaagttggggcctgaggaaatcacccgcgac
attcccaacgtctcggaagaggcgctgaagaatctcgacgaggccggcatcgtctacatc
ggcgccgaggtccgcgcgggcgacatcctggtcggcaagatcacgcccaagggcgagagc
ccgatgacgccggaggagaagctgctccgcgccatcttcggcgagaaggccgccgacgtg
cgcgacacctcgctgcgcctgccccccggcaccaccggcaccatcgtggaagtgcgcgtg
ttcaaccgccacggcgtggacaaggacgagcgtgccctcgccatcgagcgcgaggagatc
gaacgcctcgccaaggaccgtgacgacgagcaggcgatcctcgaccgcaacgtctatggc
cgactgatcgagatcctcgacggcaagaccgccatcgccgggcccaagggattcaagaag
gagagcgtggtcacccgcgagctcctcaccgagtacccgcgctcgcagtggtggctgttc
gcggtggccgacgacgccatcatggcggagctggaagccatccgcgcccagtacgacgac
tcgaagaagcgcctggagcagcgcttcctcgacaaggtcgagaagctgcagcgcggcgac
gagctgccccccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaagatc
cagcccggcgacaagatggccggccgccacggcaacaagggcgtggtctcgcgcatcgtg
cccgtggaggacatgcccttccttgaggacggcaccaatgtcgacatcgttctgaacccg
ctgggcgtgccttcgcgcatgaacgtcggacagatcctggagacgcacctcggctgggcc
tgcgcgggcctcggccggcaggtggcggccgcggtggacgcctattacgccaagcaggat
ctgaagcccctgcgggaccggctggagaccatctacggcaagccggagatcgaccagctt
caggatggggaacttcccgagctgggcgagaacctgcgcaagggcgtgcccatggcgacg
ccggtgttcgacggcgcccatgaggcggacatcgagcaggagctagaacgggcggggctt
gaccgctccggccagtccacgctgttcgacggacgcaccggcgagccgttcgatcgtaag
gtcacggtgggctacatctacatgctgaagctccaccatctggtcgacgacaagatccac
gcccgttccatcggcccctactcgctcgtcacccagcagcccctgggcggcaaggcgcag
ttcggcggccagcgcttcggcgaaatggaggtgtgggccctggaggcctacggcgccgcc
tacacgctgcaggagatgctgaccgtgaagtcggacgacgtggccggccgcaccaaggtc
tacgaggccatcgttcgcggcgaggacaccttcgagagcggcattcccgagagcttcaac
gtgctcgtgaaggaaatgcgctcgctcggcctcaacgtcgatctcgagaacacctga
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integrated database retrieval system
