Xanthobacter dioxanivorans: EZH22_20250
Help
Entry
EZH22_20250 CDS
T07733
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xdi
Xanthobacter dioxanivorans
Pathway
xdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EZH22_20250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdi03400
]
EZH22_20250 (mfd)
Enzymes [BR:
xdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EZH22_20250 (mfd)
DNA repair and recombination proteins [BR:
xdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EZH22_20250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QRG05400
UniProt:
A0A974PKS1
LinkDB
All DBs
Position
4350952..4354458
Genome browser
AA seq
1168 aa
AA seq
DB search
MKRPQPLADALAEGRPLILSRVADGMEGMVVADLARSIAAQKNAPWPSLTMVCRDGQRMA
AVERGLAFFAPELEVISFPSWDCLPYDRASPNAAIVARRMAALAKLARVKGGAASVLLTT
VNATVQRVPAKGLVAAQSLVAAPGNAIALDGIVEWAEQNGFLRTPTVRDTGEYAVRGGLI
DLFPPGLDAPIRLDFFGETLETIRAFDPETQRTTGQVRSLELVPMAEFQLTTDTMRRFRM
AYVAAFGAAQKGDTLYEAVSEGRRHAGMEHWLPLFHERMDTLFDYIEGGTLLLDSLLEEA
AGERIAQIADYYEARKSAQDQRGGPVYNPLPPDKLYLAGPEWNKRIARMRLARLSPFAVP
ENADGRAIDLGGTQGRSFAAERAETEGNVFDAAVAHVRDLQKTKKVILAGWSEGSRERLG
TVLADHGLKGAAAISRFDSLSALPKTQAALAVFGLEAGFETPDFAVIGEQDILGDRLVRP
KRKARRPQDVLTELTALTAGDLVVHVDHGIGRFVGLKTVEAMGAPHDCLEIHYAGGDKLF
LPVENLELLSRYGSEDTEAQLDKLGGGAWQARKARMKKRIREMASELIKIAAQRQLGEAP
KLVPAMGLYDEFRARFPYEETDDQEAAIDSVLDDLASGHPMDRLICGDVGFGKTEVALRA
AFAVALSGKQVAVVVPTTLLARQHFKTFSDRFHGLPVNVAQASRMVTGKDLAAVKKGLAD
GAVDIVVGTHALLGKAIHFKDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLTATPIPR
TLQLAMTGVRELSIIATPPVDRLAVRTFITPFDALIVREALLRERYRGGQSFYVVPRIED
LAEVREFLAASVPEVKVAVAHGQLAAGALEDIMTAFYDGQYDVLLSTTIVESGLDVPNAN
TLIVHRADMFGLAQLYQLRGRVGRAKARAYAIFTVPATKPITAQAERRLKVLQSLETLGA
GFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLQEAIAHLKAGITDYVDDKWSPN
ITIGMPVLIPEDYVADLHVRLALYRRLADIQDDAEIDAFGAELVDRFGPTPEEVGQLLQL
TQIKALARKANVEKVDSGPKGVVFGFRDNEFADPSGLVKLIGQEGSLAKVRPDFKVVFLR
DWPTAEARLKGTLVVLKKLAALAVKKGL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcgtccccagcccctcgccgatgcgctggccgaaggccgaccgctcatcctctcc
cgcgtcgctgacggcatggagggcatggtggtggcggaccttgcccgctccatcgccgcg
cagaaaaacgcaccctggccgagcctgacgatggtgtgccgcgacgggcagcgcatggcg
gccgtggagcggggccttgccttcttcgccccggagctggaggtgatttccttcccctcg
tgggactgcctgccctacgaccgcgcctcgccgaacgccgccatcgtggcgcggcgcatg
gcggcgctggcgaagctcgcgcgcgtcaagggcggggcggcgagcgtgctgctcaccacc
gtcaacgccacggtgcagcgcgtgccggccaaggggctcgtcgcggcccagtcgctggtg
gccgcgccgggcaacgccatcgccctcgacggcatcgtcgaatgggccgagcagaacggc
ttcctgcgcacgcccacggtccgcgacaccggcgaatacgcggtgcgcggcggcctgatc
gacctcttcccgcccggcctcgatgcgcccatccgcctcgatttcttcggcgagacgctg
gaaaccatccgtgccttcgatcccgagacccagcgcaccaccgggcaggtgcggtccctg
gagctggtgccaatggccgagttccagctgaccaccgacaccatgcggcgcttccgcatg
gcttatgtggccgccttcggcgccgcgcagaagggcgacaccctctatgaggcggtgagc
gagggccggcgccacgccggcatggagcactggctcccgctcttccacgagcgcatggac
acgctgttcgactatatcgagggcggcacgctgctccttgattcgttgctggaggaggcg
gccggcgagcgcatcgcccagatcgccgactattacgaggcgcgcaagtcggcgcaggac
cagcggggcggcccggtctacaatccgctgccgccggacaagctgtatctggccggtccc
gaatggaacaagcgcatcgcccggatgcgccttgcccgcctcagcccgttcgccgtgccg
gagaatgcggacggccgcgccatcgacctcggcggcacgcagggccgctcgtttgccgcc
gagcgggcggagaccgagggcaacgtcttcgacgccgccgtcgcccatgtgcgggacctg
cagaagaccaagaaggtcatcctcgccggctggtccgagggctcgcgcgagcggctcggc
acggtgcttgccgaccacgggctgaagggcgccgccgccatctcccgcttcgacagcctc
tccgccttgccgaagacgcaggcggcgctggccgtgttcgggctggaggcggggttcgag
acgccggacttcgccgtcatcggcgagcaggacatcctcggcgaccgcctggtgcgcccc
aagcgcaaggcgcgccggccgcaggacgtgctcacggaattgaccgcgctcaccgccggc
gacctcgtggtgcacgtggaccacggcatcggccgcttcgtcggcctgaagaccgtggag
gccatgggcgccccccacgattgcctggagatccattatgccggcggcgacaagctgttc
ctgccggtggagaacctggagctcctgagccgctacggctcggaggacaccgaggcccag
ctcgacaagctgggcggcggggcctggcaggcgcgcaaggcgcggatgaagaagcgcatc
cgcgagatggcctccgagctgatcaagatcgccgcccagcgccagctcggcgaggcgccg
aagctggtgcccgccatgggcctctacgacgagttccgcgcccgcttcccctacgaggag
acggacgaccaggaagccgccatcgactcggtgctggacgacctcgcctccggccacccc
atggatcggctgatctgcggcgacgtgggcttcggcaagacggaagtcgccctgcgggcc
gccttcgccgtggcgctctccggcaagcaggtggcggtggtggtgcccaccacgctgctt
gcccgccagcatttcaagaccttctccgatcgcttccacggcctgccggtgaacgtcgcc
caggcgtcgcggatggtgacgggcaaggacctggccgcggtgaagaagggtcttgccgat
ggcgccgtcgacatcgtggtgggaacccacgcactgctgggcaaggccatccacttcaag
gacctcggcctcgtcatcgtggacgaggagcagcatttcggcgtctcccacaaggagcgg
ctgaagcagctgcgggccgaggtgcatgtgctcaccctcaccgcgacgcccatcccgcgc
accctgcaactggccatgaccggggtgcgcgagctctccatcatcgccaccccgccggtg
gaccggctcgcggtgcgcaccttcatcacgccgttcgatgcattgatcgtgcgcgaggcg
ctgctgcgcgagcgctatcgcggcgggcagagcttctacgtggtgccgcgcatcgaggac
ctagccgaggtgcgcgagttccttgccgcctcggttccggaggtgaaggtggcggtggct
cacggccagctggcggccggggcgctcgaagacatcatgaccgccttctatgacggccag
tacgacgtgctgctctccaccaccatcgtggagagcggcctcgacgtgcccaacgccaac
accctcatcgtgcaccgggccgacatgttcggcctcgcccagctctaccagctgcgcggg
cgcgtcggccgggccaaggcgcgggcctatgccatcttcaccgtgccggcgacgaagccc
atcaccgcgcaggcggaacggcggctgaaggtgttgcagtcgctggagacgctgggcgcc
ggcttccagctggcgagccacgacctcgacatccgtggcgccggcaaccttttgggcgac
gagcagtccggccatatcaaggaagtgggctacgagctgtaccaggagatgctgcaggag
gcgatcgcccacctcaaggccggcatcaccgactatgtggacgacaagtggtcgcccaat
atcaccatcggcatgccggtgctgatccccgaggactacgtggccgacctgcacgtgcgc
ctcgccctctaccggcgcctcgcggacattcaggacgacgcggagatcgacgccttcggg
gcggagctggtggaccgcttcggcccgacgccggaggaggtgggccagctgctccagctc
acccagatcaaggcgctggcccgcaaggccaatgtggagaaggtggattccgggccgaag
ggcgtggtgttcggcttccgcgacaacgagttcgccgacccctcgggcctggtgaagctg
atcgggcaggaggggagcctggccaaggtgcgccccgacttcaaggtggtgttcctgcgc
gactggcccaccgccgaagcgcggctgaagggcacgctggtggtgctgaagaagctcgcc
gcgctggcggtcaagaagggactgtga
DBGET
integrated database retrieval system
