Xanthobacter dioxanivorans: EZH22_22960
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Entry
EZH22_22960 CDS
T07733
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xdi
Xanthobacter dioxanivorans
Pathway
xdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EZH22_22960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdi03019
]
EZH22_22960
03009 Ribosome biogenesis [BR:
xdi03009
]
EZH22_22960
Enzymes [BR:
xdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EZH22_22960
Messenger RNA biogenesis [BR:
xdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EZH22_22960
Ribosome biogenesis [BR:
xdi03009
]
Prokaryotic type
rRNA processing factors
EZH22_22960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRG05860
UniProt:
A0A974SHM8
LinkDB
All DBs
Position
complement(4933096..4936359)
Genome browser
AA seq
1087 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRLALIEEEERAARLAEDEVEVKERRRERGRSRRSN
HDHSVSEAVEEAEVVAEAAKVEAADVDVAEVNVTEANSAEVVSAPVDVAPVEVANIDAPA
SFEAPGPAAEPAVPVPEHHAPSSVTDLLSAAEAVEASAELKEAAAEAEFGTPLPAPQEQH
VADDEATRRWEAPEGETHPAPVLEGDDEAPSQARSRKHDDDEDEDEDDGDVDQIDEDEEI
EHLGADEDALEEVPERAPQRRARSYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLA
GRYSVLMPNTARGGGISRKITNAVDRKRLKDVVQDLEVPEGMGIILRTAGANRTKVEIKR
DFEYLLRLWETVRELTLSSAAPNLVYEEGSLIKRAIRDLYNKDIDDIQVAGEEGYKEAKD
FMRMLMPSHAKMVLPYREPQPIFARYGVEQQLDAMFSPVVQLKSGGYIVINPTEALVSID
VNSGRATREHHIEDTALKTNVEAAEEIARQLRLRDLAGLIVVDFIDMEEKRNNRAVERKL
KDCLKNDRARIQIGRISHFGLLEMSRQRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQL
LRALEEQLLRSQTHNLIARTRTEVALYVLNQKRAHLRELEERFSVTLSIIADESVTGHQP
FIIEKGEPAVPAPAAPRLSTVVQPDSILPDEDYLEEEDEEGVEEPAEAEADVESEAGAEP
SGERTDENGRRRRRRRRRRGDRKEGREPGAEGEDEEDASAEAEAEDGEAEDDDRSEEERA
ADAERSDEENAERRRRRRGRRGGRRNRRERDGDAPLAAGEGDEPGEGDEEGEDAVGASVP
VSDADAAELFTAGTPAEENPAGEISASEAPARRRTPAFVTQPVAAPLPVEAAPVPAATEK
PAEDEAAVAPKPRRRSTVREKAPAILSSEAAVVPAPAEPSAAPAPAAEATDASVSASGEA
PAPSGQEAGTREPAPQDTAPQDSVARDSEAQELANREPLIPVPAAPAADEPPAKPKSGWW
QRKLFGG
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgcttatcgatgcgacccatccggaggagacccgggtggtggtcgtg
cgcgggaaccgggtcgaagagttcgactatgagtccgcgtcccgcaagcagctgcgggga
aacatctatctcgcgaaggtgacgcgagtggagccgtcgctgcaggcggcgttcatcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgagatccatcccgactattaccag
atcccggtcgccgaccgcctcgccttgatcgaggaggaggagcgcgctgcccgcctcgcc
gaggacgaggtcgaggtgaaggagcgtcgccgcgagcgcggccggtcccgccgctcgaac
cacgatcacagcgtgagcgaagctgtcgaggaagccgaggtcgtcgccgaggcggccaag
gtcgaggcggcggatgtcgacgtcgcggaagtcaacgtgacggaagccaactcggcggaa
gtcgtttcggcgccggtcgatgtcgcgccggttgaggtcgcgaatatcgatgcgccggcc
tccttcgaggcgcccgggcccgctgccgagcccgccgtccccgtgccggagcatcacgct
ccgtcgagcgtcaccgacctgctgtccgccgccgaggcggtggaagcctccgccgagctg
aaggaagctgcggccgaggccgagttcggcaccccgctgccggcgccgcaggagcagcac
gtggccgacgacgaggccacccgccgctgggaggcccccgaaggcgagacccatcctgcc
cccgttctcgaaggcgatgacgaggccccctcccaggcccgcagccggaagcacgacgac
gatgaggacgaggatgaggacgacggcgacgtcgaccagatcgacgaggacgaggagatc
gagcatctcggcgccgacgaggacgccctggaagaggtgcccgagcgcgcgccgcagcgc
cgcgcccgctcctacaagatccaggaggtcatccgccgccgccaggtgatgctggtgcag
gtggtgaaggaggagcgcggcaacaagggcgccgccctgaccacctacctgtcgctcgcc
ggccgctattccgtgctgatgcccaataccgcccgcggcggcggcatctcccgcaagatc
accaatgcggtggaccgcaagcgcctgaaggacgtggtgcaggatctggaggtgccggag
gggatgggcatcatcctgcgtaccgccggcgccaaccgcaccaaggtggagatcaagcgc
gacttcgaatatctcctgcgcctgtgggagacggtgcgcgagctcaccctctcctccgcc
gcgccgaaccttgtctatgaggagggctcgctgatcaagcgggccatccgcgacctctat
aacaaggacatcgacgacatccaggtggccggcgaggaaggctacaaggaggccaaggac
ttcatgcgcatgctcatgccgagccatgccaagatggtcctgccctatcgcgagccccag
cccatcttcgcccgctacggcgtggagcagcagctcgacgccatgttctcgccggtggtg
cagctgaagagcggcggctacatcgtcatcaacccgacggaagccctggtctccatcgac
gtgaactccgggcgcgccacccgcgagcaccatatcgaggacaccgccctcaagaccaac
gtggaagccgccgaggagatcgcccggcagctgcgcctgcgcgaccttgccggcctcatc
gtcgtcgatttcatcgacatggaggagaagcgcaacaaccgggcggtggagcgcaagctc
aaggattgcctgaagaacgaccgggcgcgcatccagatcggccgcatctcccatttcggc
ctgctggagatgtcgcgccagcgcatccgcaccggcgtgctggagagctccatcgaggtg
tgcccgcactgcggcggcaccggccacgtgcgctccgccgcctccgtctcgctccagctg
ctgcgcgcgctggaggagcagttgctgcgctcgcagacccacaacctcatcgcccgcacc
cgcaccgaggtggcgctctatgtgctcaaccagaagcgcgcccacctgcgcgagctggag
gagcgcttcagcgtcaccctgtccatcatcgccgacgagagcgtgaccgggcatcagccg
ttcatcatcgagaagggcgagccggccgtgcccgcccccgccgccccgcgcctctccacc
gtggtgcagcccgattccatcctccccgacgaggactatctcgaggaggaggatgaggaa
ggcgtcgaggagccggccgaggccgaagccgatgtcgaaagtgaggccggggctgagccc
tccggcgagcgcaccgacgagaacggccgccgccgccgccgccgccgccgccggcggggc
gaccgcaaggagggccgcgagcccggcgccgagggcgaggatgaggaagatgcctcggcc
gaagccgaggccgaggacggtgaggccgaggatgacgaccgctccgaggaggagcgcgcc
gctgacgccgagcgcagcgacgaggaaaacgccgagcgtcgccgtcgtcgccgtggccgt
cgcggcggtcgccgcaaccggcgcgagcgtgacggcgacgccccgctggccgccggcgaa
ggtgacgagccgggcgagggcgacgaggagggcgaggacgcagtcggggcatccgtgccg
gtttccgatgcggacgccgcggagctttttaccgccgggactcccgctgaggagaatccc
gccggggagatttccgcctcggaggcacccgctcgccggcgtaccccggcattcgtgacg
cagccggtcgccgcgccgcttccggtggaagctgcgcccgtgcccgccgcaaccgagaag
ccggccgaggatgaagccgccgtggcgccaaagccgcgccgccgctccacggtgcgcgag
aaggcgccggcgatcctctcgtccgaggccgccgtcgttcccgctccggcggagccctcg
gccgcaccggcgcctgcggctgaggccacggacgcttccgtctccgccagcggggaggcg
cccgcgccttcaggtcaggaagctggaacccgggaaccggcgccccaggacacggcgccc
caggactcggtggcccgggactcggaggcccaggagttggccaaccgggagcccctcatc
ccggttcccgccgccccggcggcggatgagccgccggccaagccgaagtccggctggtgg
cagcgcaagctgttcggcggctga
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