Xanthobacter dioxanivorans: EZH22_26030
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Entry
EZH22_26030 CDS
T07733
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xdi
Xanthobacter dioxanivorans
Brite
KEGG Orthology (KO) [BR:
xdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xdi03016
]
EZH22_26030 (rnd)
Enzymes [BR:
xdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EZH22_26030 (rnd)
Transfer RNA biogenesis [BR:
xdi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EZH22_26030 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QRG06370
UniProt:
A0A974SI59
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All DBs
Position
5598407..5599570
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AA seq
387 aa
AA seq
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MDPITSTEALAAACERLARHPFVTVDTEFLRETTFWPKLCVVQVASPDEAILIDALADGL
DLAPLYRLMGNERVMKVFHAGRQDIEIIWHQARLIPHPVFDTQVAAMVLGYGDSISYDQL
VQRTTGHNLDKSSRFTDWSRRPLSQAQITYAIADVTHLRDIYIKLTTDLETRGRGEWVGE
EMHVLTSPATYEQDPDTAWERLKSRVRKPRELAVLVELAAWREREAQARDLPRGRVIKDD
VIGEIALQQPQSPEKLAELRSVPKGFERSRYGEAVLDAVRRGLARDPKTLPRIERDKPLP
NGASATVELLKVLLRMTAEQNAVAAKVIATTEDLERIAVSDDADVQALKGWRRELFGDRA
LALKAGRLALAVERGRVVAVERQEEER
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatcacctcgaccgaggcgctggctgcggcctgcgagcgcctcgcccgccat
cctttcgtcaccgtcgacacggaattcctcagggaaaccacgttctggccgaagctctgc
gtggtgcaggtggcctcgccggacgaggcgatcctcatcgacgcgctcgccgacggcctc
gacctcgcccccctctaccgcctgatggggaatgagcgggtgatgaaggtgtttcatgcc
ggccggcaagacatcgagatcatctggcaccaggcgcgactcattccccatccggtgttc
gacacccaggtggcggccatggtgcttggctatggcgacagcatttcctacgaccaattg
gtgcagcgcacgaccggccacaacctcgacaagtcgtcccgcttcaccgactggtcgcgc
cggccgctcagtcaggcgcagatcacctacgccatcgccgacgtcacgcacctgcgggac
atctacatcaagctcaccaccgacctcgaaacgcgtggccgtggcgagtgggtgggcgag
gaaatgcatgtgctcacctctccggccacctatgaacaggatccggataccgcgtgggag
cgtttgaagtcacgcgtgcgcaagccccgggagctggcggtgctggtggagctggccgcc
tggcgcgagcgggaggcacaggcccgcgacctgccgcgcggccgggtgatcaaggacgac
gtgatcggcgagatcgccctgcagcagccgcagagccccgaaaaactggccgagctgcgt
tcggtcccgaagggcttcgagcgctcgcgctatggcgaggcggttctggatgcggtccgg
cgcggtctcgcccgcgacccgaagacgctgccgcgcatcgagcgcgacaagccgctgccc
aatggcgcaagcgcaacggtggagctgctgaaggtgcttctgcgcatgacggccgagcag
aatgcggtggccgccaaggtgatcgccaccaccgaggacctggagcgcatcgccgtgagc
gacgatgcggatgtgcaggccctgaagggttggcggcgcgagctgttcggggatcgcgcg
ctggcgctcaaggcggggcgccttgcgctcgccgtcgaacgcgggcgggtggtcgcggta
gagcgacaggaagaagaacgctag
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