Xenorhabdus doucetiae: XDD1_0342
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Entry
XDD1_0342 CDS
T03784
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_0342 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_0342 (rhlB)
Enzymes [BR:
xdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XDD1_0342 (rhlB)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XDD1_0342 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDG16045
UniProt:
A0A068QQC8
LinkDB
All DBs
Position
complement(321233..322516)
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AA seq
427 aa
AA seq
DB search
MSKTHLTEKKFSDFSLHPKVLEALDKKGFYNCTPIQALTLPLTVEGRDVTGQAQTGTGKT
LAFLASTFNYLLTHPAARERKTNQPRALIMAPTRELAVQIYSDAEELAEVTGLKMGLAYG
GDGYDKQLKVLEAGVDIVIGTTGRLIDYTKQGHIHLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRLPAATERMNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLHILE
EFSLGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIEEYIQHQIPVSKYNSDALLQDLPVPKRRNRTRSGGHPRRTNMARRGNTT
RNRKRPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttgacagaaaagaagttttccgacttctcattgcaccccaaagtc
ttagaagcccttgataaaaaggggttttacaactgcacgccgatacaggcgctaacattg
cctttaactgtcgaaggccgagatgttacggggcaagcacaaaccggaacgggcaagacg
ctggcatttttggcgtctacttttaattacttattgacccatcctgcggcgagagagcgt
aaaacgaatcagccaagagcgctgatcatggcgccgacccgtgaattggcggttcagata
tactctgacgcagaagaattggcggaagtcactgggttgaaaatgggtcttgcctacggc
ggcgatggctatgataaacagcttaaggtactggaagctggcgtcgatatcgtcattggt
accacagggcgtttgatcgattacactaaacagggtcatatccatcttggggccattcaa
gttgttgtgcttgatgaagctgatcgcatgtatgatctgggctttatcaaagacattcgc
tggttgttccgccggctgcctgcggcgacagaaagaatgaatttgctgttttccgcaacg
ctctcttatcgggtacgtgagctcgcttttgaacagatgaataatcctgagtatgtggaa
gtcgaacctctgcaaaaaaccgggcatcgcatcaaggaagagctattttatccttccaat
gaagaaaaaatgcgcctgctacagacgctgctggaagaagagtggcctgatcgctgcatc
atttttgccaataccaagcatcgctgtgaagacatctgggcccatctggctgctgatggt
catcgggttggtttactgaccggtgatgttgcacagaaaaaacgtctgcatattcttgaa
gaattcagcctgggcaatctggacattctggttgccaccgatgttgccgcccgtgggctg
catatcccatctgtaacccatgtatttaactatgatctaccggatgactgtgaagattat
gttcaccggattggccggacaggtcgtgctggagaaagcggccactccatcagcctggca
tgtgaagaatatgcgctgaacttaccagccattgaagaatatatccagcaccagatacct
gtcagcaaatataacagtgatgcgttgctacaagatctgccagtccctaagcgccgtaac
cgtacccgctcagggggacaccctcgacgtaccaacatggcgcgccgtggcaataccaca
cgcaatcgtaagcgtccaagctaa
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