Xenorhabdus doucetiae: XDD1_0345
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Entry
XDD1_0345 CDS
T03784
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_0345 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xdo03021
]
XDD1_0345 (rho)
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_0345 (rho)
Transcription machinery [BR:
xdo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XDD1_0345 (rho)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XDD1_0345 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
CDG16048
UniProt:
A0A068QMH9
LinkDB
All DBs
Position
323731..324990
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQDELQKMWILRKIIHPMGETDAMEFLINKLAMTKTNEEFFDFMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtatctgagttgattactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaagcaggacatcattttctctattctcaaa
cagcatgcgaaaagcggagaggatatttttggagatggtgtgctggagatattgcaggat
ggatttggtttcctccgctccgcagacagttcttaccttgcaggtcccgatgatatctac
gtttctcctagccaaatccgccgctttaacctccgtaccggtgacaccatttcagggaaa
atccgcccacccaaagaaggtgaacgctattttgccctgttgaaagttaatgaagttaac
tttgacaaacctgaaaacgcccgcagtaaaatcctgtttgaaaacttgacgccacttcat
gccaataaccgcttgcgtatggaacgtggtaacggatcgactgaagatttgactgcccgt
gttctggatctggccgcgccgattggtcgtggtcagcgtggcctgattgtggcgccacca
aaagccggtaaaaccatgctgctgcaaaatatcgcagctaacattgcccacaactatccc
gattgcgttctgatggttttgctgattgatgagcgtccagaagaagtcaccgagatgcag
cgtctggtaaaaggcgaagtcattgcttcaacctttgatgaaccggcttcccgccatgtt
caagtggctgagatggttatcgaaaaagcgaaacgtctggttgaacacaagaaagacgtt
atcatcctgctggactccattacccgtctggctcgtgcctataacaccgtggttccggct
tccggtaaggttctgacggggggagtggatgcgaacgccctgcatcgtccgaaacgtttc
tttggtgcggcacgtaacgttgaagaaggcggcagcctgaccatcattgcgactgcgctg
gttgataccggttccaagatggatgaggttatttacgaagagtttaaaggtacaggtaac
atggaattgcacctgtcacgtaagattgctgaaaaacgtgtcttcccagccattgattac
aaccgctctggaacccgtaaagaagaactgctcactacacaggatgagctacagaagatg
tggatcttacgtaagatcattcacccgatgggtgaaaccgatgcgatggaattccttatc
aacaaactggctatgacaaaaacaaacgaagaattcttcgactttatgaaacgctcatag
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