Xenorhabdus doucetiae: XDD1_0368
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Entry
XDD1_0368 CDS
T03784
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo00300
Lysine biosynthesis
xdo00470
D-Amino acid metabolism
xdo01100
Metabolic pathways
xdo01110
Biosynthesis of secondary metabolites
xdo01120
Microbial metabolism in diverse environments
xdo01230
Biosynthesis of amino acids
Module
xdo_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
XDD1_0368 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
XDD1_0368 (dapF)
Enzymes [BR:
xdo01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
XDD1_0368 (dapF)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
CDG16071
UniProt:
A0A068QND0
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Position
349424..350248
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPDLDFHY
RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQAGYMTLSITHDDQVCVNMGE
PDFEPQRVPFRANKAEKTYIIRAIERTVLCGVVSMGNPHCVIQVEDVNTAEVAILGPVLE
SHERFPQRANIGFMQVINRGHIRLRVFERGAGETQACGSGACAAVAVGIQQNLLDNQVRV
DLPGGTLQIRWDGPGKPLFMTGPATHVYDGTIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctccaaaatgcacggtcttggcaatgactttatggtcgttgatgccgtgacc
caaaatgtttatttttctccagagttaatttgccgtctggctaaccggcatactggggtg
ggttttgatcagcttttggttgttgaagccccctatgatcctgacttagactttcactac
cgcatttttaatgcggatggcagtgaagtttcccagtgtggcaatggggcgcgctgtttt
gcccgttttgttcgcctcaagggtctgaccaataaacgcgatatcaaggtcagcacgcaa
gcaggctacatgacattgagcatcacccatgatgaccaagtttgtgtcaacatgggtgag
ccggattttgaaccgcagcgggttccttttcgcgccaataaagcggagaaaacctatatt
atccgtgccatcgaacgcacggtgctttgtggcgttgtgtcgatggggaaccctcactgt
gtcatacaggttgaggatgtgaacaccgctgaagtggccatattggggccggtgttagaa
agccatgaacgttttccgcagcgggccaatattggttttatgcaggtgatcaatcggggc
catattcggttgcgtgtttttgagcgtggtgcgggtgagacacaggcatgtggcagtggc
gcatgtgccgcggtcgccgtcggtatccagcaaaatctgctggataatcaagttcgggtt
gatcttccgggaggaaccctgcaaattcgctgggatgggccaggcaagccactctttatg
accgggcctgcaacccacgtctatgatggcacgattcatttgtga
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