Xenorhabdus doucetiae: XDD1_0401
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Entry
XDD1_0401 CDS
T03784
Symbol
orn
Name
(GenBank) Oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
XDD1_0401 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_0401 (orn)
03009 Ribosome biogenesis [BR:
xdo03009
]
XDD1_0401 (orn)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XDD1_0401 (orn)
Ribosome biogenesis [BR:
xdo03009
]
Eukaryotic type
Pre-60S particles
RNases
XDD1_0401 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RE_XamI
Motif
Other DBs
NCBI-ProteinID:
CDG16104
UniProt:
A0A068QN19
LinkDB
All DBs
Position
381285..381830
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AA seq
181 aa
AA seq
DB search
MSKSENNLIWIDLEMTGLDPERDRIIEIATIVTDSELNILAEGPVIAVHQSDEQLALMDD
WNVRTHTASGLVERVKQSQCGDAEAEKATIAFLEQWVPAGKSPICGNSVGQDRRFLFRYM
PELEKYFHYRYLDVSTLKELARRWKPEMLSGFSKKNTHQALDDIRESIAELVYYREHFIQ
K
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagtgagaacaatcttatctggatagatttagagatgacggggttagatccc
gagcgcgatcgcataattgaaattgcgactattgtcaccgattcggaattgaatatcctt
gcagagggccccgtgattgcggttcatcagtcggatgaacaattggcgttgatggatgat
tggaatgtccgcacgcataccgccagtggattggtggaacgtgtaaagcagagccagtgt
ggtgatgcagaagctgaaaaagccactattgcttttttggaacagtgggtgccggcagga
aaatccccaatttgtggcaatagcgtggggcaggatcgccgttttctgttccgttatatg
ccagagttagaaaagtattttcactatcgttacttggatgtcagtacgctcaaggagttg
gcgcgtcgttggaagcctgagatgttatcagggttcagcaagaaaaatacccatcaggca
ttggatgacattcgggaatcgattgctgaattggtctattaccgtgagcactttatccag
aaataa
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