Xenorhabdus doucetiae: XDD1_0428
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Entry
XDD1_0428 CDS
T03784
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_0428 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_0428 (rnr)
03016 Transfer RNA biogenesis [BR:
xdo03016
]
XDD1_0428 (rnr)
Enzymes [BR:
xdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XDD1_0428 (rnr)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XDD1_0428 (rnr)
Transfer RNA biogenesis [BR:
xdo03016
]
Prokaryotic type
tRNA degradation factors
XDD1_0428 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNA_pol_Rbc25
LexA_DNA_bind
RNase_II_C_S1
HTH_11
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CDG16131
UniProt:
A0A068QNH9
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Position
411731..414217
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AA seq
828 aa
AA seq
DB search
MKQGDKQLADDNRGMTMSKDPFREREAEKYESPIPSREYILDIISKHTTPVSRQELAQEL
QLTTPDALEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGH
KEDYFLSAEQMKMAIHGDVVLAQPLRPDRKGRIEVRIVRILEPKNSQIVGRYFMDAGMGF
VVPDDSRLCFDILIPKEATCGARMGNVVVVELTDRSTRRTKAIGKVVEVLGETMGTNMAV
EIALRTHEIPHSWPPMVEKQVAGLDENVPESAKQGRVDLRELPLVTIDGEDARDFDDAVY
CERKRGGGWRLWVAIADVSYYVRPQTALDSEACSRGNSVYFPSQVVPMLPEVLSNGLCSL
NPEVDRLCMVCEMTVSAQGKLSSYKFYEAVMNSHARLTYTKVWKMLQGDQELREHYKPLV
KHIEHLHELYQALEQAREERGAISFESEEAKFIFNAEHRIERIEPVVRNDAHKLIEECML
LANIAAARFVEKHHEPALYRIHDRPKEESILNLRSVFNELGLSLLGGLKPEPKDYAQLMK
AVADRPDRELLQTMLLRSMKQAIYEPENRGHFGLALRSYSHFTSPIRRYPDLALHRAIKY
LLAQEENGAPENGAAEPRSTSTGGWHNDLEQMLQLGNHCSMTERRADEATRDVADWLKCD
FMQDQVGNIFTGLITSVTGFGFFVRLHDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESSG
QTYRLGDEVEIRVEAVHMDERKIDFTLLSTTRKARNQGKTARNKAKKGASERKNGKKGFD
HKKSANFEPDSPFRKKKRAEKPEASKPSDKSGKKEKNHQARRKKLRQN
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaaggggataaacagcttgctgatgacaatagaggaatgacgatgtcaaaagat
ccttttcgggaacgagaggctgaaaaatacgaatctcctatcccaagccgtgaatatatc
ttggatatcatttctaaacacaccactccggtaagccgtcaggaattagcacaagaactt
cagttaaccacgccagatgcactggaagcattgcgccggcgtttgcgggcaatggaacgt
gacgggcaattggtttttacccgtcgtcaatgttatgcgttgccagagcggctggattta
ttgaaaggcacggtaattggccaccgtgatggctatggttttctgcgtgtggaaggccac
aaagaagactattttctgtcagccgaacagatgaaaatggcgatccacggtgatgtcgta
ctggcacaacctctgcgtccggacagaaaaggccgcattgaagtacgcatcgtgcggatt
ttggagccaaagaatagccaaattgttggccgctattttatggatgcgggcatgggattt
gtcgtccctgatgacagccgcctgtgtttcgatatcttgatcccgaaagaagcaacctgc
ggggcgagaatgggcaatgtcgtggtggttgaattgaccgatcgctcaactcgccggact
aaagccatcggcaaagttgttgaagtattgggcgaaactatgggaacgaacatggcggtt
gaaattgcgctgcgtacccatgaaattccccatagctggccaccaatggtagaaaaacag
gtcgctggcttggatgaaaatgtaccggaatcggccaaacaaggccgggtagacttacgt
gagttgccgctggtgaccattgacggcgaagatgcacgggactttgacgatgcggtatat
tgcgaaagaaaacgcggtggtggttggcggttgtgggtagccattgccgatgtcagctac
tatgtgcgtccgcaaacggcgttggatagtgaagcatgcagccgtggtaactcagtttat
ttcccatcccaagtcgtaccgatgctgccggaagtgctgtccaatggattgtgctccctc
aatccagaagttgaccgcctgtgtatggtgtgtgaaatgaccgtttccgcccaaggcaaa
ctctcttcctataagttttatgaagcggtgatgaattcacatgcccgtttgacctataca
aaagtgtggaagatgttgcagggcgatcaagagctgcgtgagcattacaaaccgctggtc
aaacatattgagcacctgcatgagttgtatcaggcactggaacaggcgcgtgaagagcgc
ggcgcgatttcatttgaatcggaagaagccaagtttatctttaatgcagagcatcgcatt
gagcgcattgaacccgttgtacgcaacgatgcgcataaacttattgaagagtgtatgctc
ctggcgaacattgctgccgctcgctttgttgaaaaacaccatgaacccgcgttatatcgc
atccatgatcggccaaaagaagagagtatcctgaatttgcgttcggtcttcaatgagctg
ggattgagcttgttggggggcttaaagccagaaccgaaagattatgcgcaattgatgaaa
gccgtcgctgatcggccagatcgtgaattgctgcaaacgatgctgttgcgttccatgaaa
caggcgatttatgagccggagaatcgggggcactttggtttggcactgcgctcttattct
cacttcacttcgccaatccgtcgctatcccgatttggcgctgcaccgggcgatcaagtac
ttattggcacaggaagaaaatggcgcaccagaaaacggtgctgctgagcctcgctcgacg
tcaaccggtggctggcacaacgatctggaacagatgctgcaattgggtaaccattgttcc
atgactgagcgccgtgctgatgaagcgacaagagatgtggcagactggctaaaatgtgac
ttcatgcaagatcaggtgggtaatattttcaccggattgattaccagcgtgacaggcttc
ggtttcttcgtccgcttgcatgatctgtttattgacggcttggtgcatgtttcgacgttg
gataacgattattatcgatatgacaatgtcggccagcgtttaattggtgagtcttccggg
caaacttatcgcctcggcgatgaagtcgagatccgggtggaagccgttcacatggatgag
cgtaagattgatttcaccttgctttcaacgacgcgcaaagcccgtaatcaggggaaaacg
gcacgcaataaggcgaaaaaaggtgcgtcagagcgtaaaaatggtaaaaaagggtttgat
cataaaaaatcagccaattttgagccagacagccctttccgtaaaaagaaacgtgcggag
aagcctgaagcgtccaagccaagtgataagtcaggcaaaaaagaaaaaaaccatcaagca
agacgaaaaaaattacggcaaaactga
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