Xenorhabdus doucetiae: XDD1_0484
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Entry
XDD1_0484 CDS
T03784
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_0484 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_0484 (deaD)
03009 Ribosome biogenesis [BR:
xdo03009
]
XDD1_0484 (deaD)
Enzymes [BR:
xdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XDD1_0484 (deaD)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XDD1_0484 (deaD)
Ribosome biogenesis [BR:
xdo03009
]
Prokaryotic type
rRNA helicases
XDD1_0484 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
CDG16187
UniProt:
A0A068QMP2
LinkDB
All DBs
Position
458748..460682
Genome browser
AA seq
644 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALEDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDAELKAPQILVLAPTRELAVQVAEACSDFSKHMRNVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLGQRRLEKFAANVQQQLESSDLDQYRALLSKLGTSDELDMD
TLAAALLKMAQGERPLILPPDPVRRPRREFNDRDRDDRRRNNNSNGFGERDRGERSERGD
RPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELP
KGMPGELLSHFTRTRILNKPMNMQLMGEAQPFERRERRGGRTGNGNGGNGGNGPRRDRDG
FSNNGGRRFNNERRGGGERGGFRGRSNDDFNGGAPRRRQSNGNV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcggcacctattctttct
gcactggaagacatgggctatgaaaagccttctcctattcaacaacaatgtattccccac
ctgctgaacggccgtgatgtgctgggtatggcacagacgggtagtggtaaaaccgctgct
ttcagcttgccgttattgcataacattgatgctgaacttaaagcgccacagatccttgtg
ttagcgccaacccgtgaactggcggtgcaggtggctgaagcgtgttcagacttttccaag
catatgcgcaatgtgaatgttgttgcgctgtacggcggacaacgttatgacgttcaatta
cgtgccttgcgtcaggggccacaagttgtggtgggaacgccgggacgtttgctcgaccac
ctgaaacgtggaaccttggatctgtctaacctgaaaggtttggtactggatgaagccgac
gaaatgttgcgtatgggctttatcgaagatgttgaaaacatcatgagccagatcccggct
gaacaccaaactgcgctgttctcagcgacaatgccagaagcgattcgccgcattacccgt
cgtttcatgaatgatccgcaggaagtgcgtattcagagcagtgtgactaaccgtcctgac
atcagccaaagctactggtctgtctacggtatgcgcaaaaatgaagcgctggtgcgtttc
ctcgaagcagaagatttcgatgcggcgattattttcgtgcgcaccaagaatgccacgctg
gaagttgcagaaacactggaacgtaacggctacaactctgcggccctgaatggtgacatg
aatcaggcgctgcgtgagcagacacttgagcgcctgaaagatggccgtttggacattctg
attgcgactgatgttgccgcgcgtggcctggatgttgatcgcatcagcttggtcgttaac
tacgacatcccaatggatgcagaatcttatgtacaccgcattggtcgtaccggtcgtgca
ggccgtgcgggtcgtgccctgctgtttgttgaaaaccgtgagcgtcgtttgctgcgtaac
gttgaacgcaccatgaaactgaccattccagaagttgaactgccaaatgcagagcttctg
ggccagcgtcgtctggagaagttcgcggccaatgttcagcaacaactggaaagcagcgat
ctggatcaatatcgtgcattgctgtccaagttgggtaccagcgatgaactggatatggat
acactggcagccgccctgctgaaaatggcacagggtgagcgcccactgatcctgccacct
gatccagtacgtcgtccacgtcgtgagttcaacgatcgtgatcgtgatgaccgtcgtcgc
aataacaatagcaacggctttggtgagcgcgacagaggtgagcgaagtgagcgcggtgat
cgccctcgtcgcgaacgtcgtgacgtgggtgatatggaactgtatcgcattgaagttggc
cgtgatgatggcgttgaagttcgtcacattgtgggtgcaattgcaaacgaaggtgatatc
agcagccgttatatcggtaacatcaaactgtttgcgacccactctacaattgaactgcca
aaaggcatgccgggagaattactgtctcacttcacccgtacccgtattctgaacaagcct
atgaatatgcagttgatgggtgaggcgcaaccttttgaacgccgtgagcgtcgtggtggc
cgcactggtaatggtaacggcggtaatggtggcaatggcccacgtcgtgaccgtgacggt
ttcagcaataacggtggtcgtcgttttaacaacgaacgtcgtggcggcggtgagcgtggt
ggtttccgcggtcgcagcaacgatgatttcaatggtggtgcaccacgtcgtcgtcaaagc
aatggcaacgtataa
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