Xenorhabdus doucetiae: XDD1_1414
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Entry
XDD1_1414 CDS
T03784
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xdo
Xenorhabdus doucetiae
Pathway
xdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XDD1_1414 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdo03019
]
XDD1_1414 (rhlE)
Enzymes [BR:
xdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XDD1_1414 (rhlE)
Messenger RNA biogenesis [BR:
xdo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XDD1_1414 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
UTP25_NTPase-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDG17113
UniProt:
A0A068QQ55
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All DBs
Position
1412749..1414230
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AA seq
493 aa
AA seq
DB search
MNFESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL
QLLSESPTQAKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSFVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPAK
RQNLLFSATFSDEIKNLANKLLKEPVSVEVARRNSASEQIEQSIHFVDKKRKGELLSYMI
GSQNWQQVLIFTRTKHGANRLAEQLNKDGVTAAAIHGNKSQGARTRALADFKTGNIRALV
ATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDI
ERLLKREIPRIAIAGYEPDPTIKAEPIQNGRNDRGNSPRGNNNSRDNSARKNGPRESRSR
ENDSRKNHSRESHSHGNSPWGQGSRDNRSRNEQPRSQRSNGKQGHAKSDQASPSRQRRQR
VSTKSPRAAASGE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtccctcggcttgaaggctgatattttgcgtgccgttgaagaacaaggc
tacgtggaacctacccctattcagcagcaggctattcctgttgtgttatccggtaaagat
ctactggccagtgcccagacaggtacgggaaaaaccgcaggatttaccttgcctatcctg
caacttttgagtgaatccccgacgcaggcaaaaggtcgccgtccggtcagggcattgatt
ttaaccccaacccgcgagctggccgctcaggtgggtgaaaatgtgcgtgattacagcaaa
tatctcagattgcgttcgtttgtggtcttcggcggtgtcagtatcaacccgcagatgatg
aaattgcgtggcggggtggatattctggtcgccacgccgggacgtttgttggacttagaa
caccagaatgccgtggatctctcccgcgttgaaattctggtcttggatgaagcggatcgt
atgttggacatggggtttatccacgatattcgtcgtgtattgaacaaattgccggcaaaa
cgccaaaatctgctcttttctgcaacgttctctgatgaaattaaaaaccttgccaataag
ttgctgaaagaaccggtcagcgtagaagttgctcggcgtaattcggcctctgaacagatt
gaacaatccatccattttgtggacaaaaagcgcaagggtgaattgctctcttacatgatt
ggcagccagaattggcaacaggtattgatatttacccgtaccaaacatggggcaaaccgg
ctggcggaacagttgaataaagatggcgtgacggcggcggcgatccacggtaacaagagt
cagggagcaagaacccgtgcgctggctgatttcaagacggggaacatccgtgcgctggtc
gcaacggatatcgctgcccgtggactggatattgatcagttgccacatgtcgtcaactat
gaattgccaaacgttgccgaagattatgtgcaccgcattggccgtaccgggcgtgccgat
gcgaccgggcaggcactctcactggtgtgtgtcgatgaacacaagctgctgaaagatatc
gagcgcctgttgaagcgagaaattccgcgcattgccattgcgggttatgaacctgatcct
actatcaaggcggaaccgattcagaatgggcgcaatgatcgtggcaatagtccacgcggt
aacaacaattcacgtgataacagtgcccggaaaaatggcccgcgtgaaagccgttctcgt
gaaaacgattcccgtaaaaaccattcacgtgaaagtcattctcacggaaatagcccttgg
ggtcagggttctcgcgataatcgttcgcgtaatgaacagcctcgcagtcagcgtagcaac
ggcaagcaaggccatgctaagtcagatcaagcatccccatcgcgccagcgtcgtcagcgg
gtcagcaccaaatccccacgtgcggcggcgtcgggagagtaa
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