Xenorhabdus doucetiae: XDD1_2085
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Entry
XDD1_2085 CDS
T03784
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xdo
Xenorhabdus doucetiae
Brite
KEGG Orthology (KO) [BR:
xdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xdo03016
]
XDD1_2085 (rnd)
Enzymes [BR:
xdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XDD1_2085 (rnd)
Transfer RNA biogenesis [BR:
xdo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XDD1_2085 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CDG17784
UniProt:
A0A068QSN8
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All DBs
Position
2145494..2146630
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AA seq
378 aa
AA seq
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MNYQLINTDAQLQSICEQAKKHARIALDTEFVRIRTYYPQLGLIQLFDGEQLSLIDPLDI
SQWQPLRELLTDPNVLKFIHAGSEDLEVFGHSFQCLPEPMIDTQVLAAFVGHPISCGFAT
LVAEYLHIELDKSESRTDWLARPLSGKQCQYAAADVYHLLPLADILMEKAELAGYLDAAK
DESNLIAQRRKEILMPEYAYKDIGNAWQLRPRQLACLQKLAAWRLNQARERDLAINFVIR
EENLWQVARYMPTSLAELDALGLSGQEIRCHGRRLLAMVAESRNIPEEACPDQIVNLIDY
PDYRKAFKEIKSLVTQVAESHHFSAELLASRRQINQLLSWHWKLKSSKYQPELIKGWRGM
LLAEPIAEILTNYSESYR
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
ttgaactatcagttgattaacaccgatgcccagttgcagtcaatctgtgagcaggcaaaa
aaacacgcaagaattgcattagatactgaatttgtacgtatacggacgtactatccccaa
ttaggtttgatacaactgtttgatggtgaacagctttctctgattgatcccctcgacatt
tcgcaatggcagcctcttagggagctattgactgatccaaatgtattaaaatttatccat
gctggcagtgaagatctggaggtttttggtcatagtttccaatgcttgccagagcccatg
attgatacccaggtattggcggcgtttgttggtcatcccatatcgtgtggctttgcgaca
ctggttgctgaatatttacatatcgaattggataagagtgaatcccgcactgattggctg
gctcggccattgagtggaaagcaatgtcaatatgctgcggcagatgtctaccatttatta
ccgctcgccgatatcttgatggaaaaggcagagttggcggggtatttggatgcggcaaaa
gatgaaagcaatctgatagcccagcgccgtaaagagatattgatgccggagtatgcttat
aaggatattggtaacgcatggcaattacggccaaggcaattggcctgtttgcaaaaattg
gctgcatggcgtttaaatcaggcgagggaacgtgatctggcgatcaattttgtgatccgt
gaggaaaatttatggcaagtagcccgctatatgccgacctctttggcagaactggatgcg
ttgggattgagtgggcaagaaattcgttgtcatggtcgtcgattgttggcgatggtggca
gagagcaggaatattccagaagaggcctgtccggatcagattgtgaatttgattgattac
cctgattatcgcaaggcgttcaaggaaattaaatcactggtcactcaggtggcggaatcc
caccatttcagtgccgagctgctggcttctcgccgtcaaatcaatcaattactgagttgg
cattggaaattgaaatcatcaaaatatcaacctgaattaatcaaaggctggcgcggtatg
ttgctggctgaacctattgcagaaatattgacaaactattcggagtcataccgttag
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